Variant report

Variant	rs10764397
Chromosome Location	chr10:23542639-23542640
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr10:23542599-23543118	HepG2	liver:	n/a	n/a
2	FOXA1	chr10:23542575-23543195	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000227537	TF binding region

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10741026	0.83[AMR][1000 genomes]
rs10764398	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828415	0.91[AMR][1000 genomes]
rs10828419	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10828421	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828423	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10828430	0.87[AMR][1000 genomes]
rs10828431	0.87[AMR][1000 genomes]
rs11013356	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11013386	0.81[ASN][1000 genomes]
rs11013397	0.87[AMR][1000 genomes]
rs11013404	0.87[AMR][1000 genomes]
rs11013412	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11813971	0.87[ASN][1000 genomes]
rs12246990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571348	0.98[ASN][1000 genomes]
rs3891382	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073300	0.89[AFR][1000 genomes]
rs4144623	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4258280	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4359107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4382803	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4433485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4626975	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747453	0.91[AMR][1000 genomes]
rs4747455	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4747461	0.81[ASN][1000 genomes]
rs4747466	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4748844	0.86[AMR][1000 genomes]
rs4748850	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748866	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4748877	0.84[AMR][1000 genomes]
rs61629455	0.84[AMR][1000 genomes]
rs7907909	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7919530	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23542200-23543000	Enhancers	HepG2	liver

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