Variant report

Variant	rs10741026
Chromosome Location	chr10:23628819-23628820
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23626915..23628880-chr10:23630424..23633314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179133	Chromatin interaction
ENSG00000224215	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10764397	0.83[AMR][1000 genomes]
rs10764398	0.83[AMR][1000 genomes]
rs10828419	0.81[AMR][1000 genomes]
rs10828421	0.85[AMR][1000 genomes]
rs10828422	0.83[AMR][1000 genomes]
rs10828423	0.83[AMR][1000 genomes]
rs10828430	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10828431	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013356	0.85[AMR][1000 genomes]
rs11013364	0.83[AMR][1000 genomes]
rs11013397	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013404	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11013412	0.82[ASN][1000 genomes]
rs12246990	0.83[AMR][1000 genomes]
rs3891382	0.81[AMR][1000 genomes]
rs4144623	0.85[AMR][1000 genomes]
rs4258280	0.83[AMR][1000 genomes]
rs4359107	0.83[AMR][1000 genomes]
rs4382803	0.83[AMR][1000 genomes]
rs4433485	0.83[AMR][1000 genomes]
rs4626975	0.85[AMR][1000 genomes]
rs4747455	0.83[AMR][1000 genomes]
rs4747463	0.96[ASN][1000 genomes]
rs4748861	0.82[ASN][1000 genomes]
rs4748866	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59664099	0.96[ASN][1000 genomes]
rs61629455	0.81[ASN][1000 genomes]
rs7907909	0.83[AMR][1000 genomes]
rs7919530	0.85[AMR][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23619600-23631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23620800-23629400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr10:23626200-23629000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:23627000-23630200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:23627400-23632600	Weak transcription	Left Ventricle	heart
7	chr10:23627600-23630600	Enhancers	Hela-S3	cervix
8	chr10:23627800-23630200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr10:23628000-23632400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr10:23628200-23629600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:23628400-23629200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:23628400-23632400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr10:23628600-23629200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr10:23628600-23630000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:23628600-23630000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr10:23628600-23632200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr10:23628600-23632400	Weak transcription	HMEC	breast
18	chr10:23628600-23632400	Weak transcription	NHEK	skin
19	chr10:23628600-23632600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:23628600-23632600	Weak transcription	Right Atrium	heart
21	chr10:23628600-23632800	Weak transcription	Liver	Liver
22	chr10:23628800-23629600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr10:23628800-23630000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr10:23628800-23630600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr10:23628800-23632400	Weak transcription	Osteobl	bone
26	chr10:23628800-23632600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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