Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10741026	0.96[ASN][1000 genomes]
rs10828425	0.91[AMR][1000 genomes]
rs10828427	0.81[AMR][1000 genomes]
rs10828430	0.96[ASN][1000 genomes]
rs10828431	0.98[ASN][1000 genomes]
rs11013377	0.91[AMR][1000 genomes]
rs11013378	0.91[AMR][1000 genomes]
rs11013386	0.81[AMR][1000 genomes]
rs11013397	0.98[ASN][1000 genomes]
rs11013404	0.96[ASN][1000 genomes]
rs11813971	0.86[AMR][1000 genomes]
rs12217944	0.91[AMR][1000 genomes]
rs12571348	0.88[AMR][1000 genomes]
rs4747460	0.81[AMR][1000 genomes]
rs4747461	0.81[AMR][1000 genomes]
rs4747463	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4748853	0.91[AMR][1000 genomes]
rs4748861	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4748866	0.91[ASN][1000 genomes]
rs72648296	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23599800-23632200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23619600-23631600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:23620600-23621400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr10:23620600-23621600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:23620600-23621600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:23620600-23621600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23620600-23621600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:23620600-23621600	Enhancers	HMEC	breast
9	chr10:23620600-23621600	Enhancers	NH-A	brain
10	chr10:23620600-23622200	Enhancers	NHEK	skin
11	chr10:23620600-23622400	Enhancers	Hela-S3	cervix
12	chr10:23620800-23621600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:23620800-23629400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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