Variant report

Variant	rs4367853
Chromosome Location	chr10:23571551-23571552
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10764398	0.92[AFR][1000 genomes]
rs10828419	0.92[AFR][1000 genomes]
rs10828422	0.85[AFR][1000 genomes]
rs10828423	0.85[AFR][1000 genomes]
rs11013364	0.85[AFR][1000 genomes]
rs12246990	0.85[AFR][1000 genomes]
rs4258280	0.83[AFR][1000 genomes]
rs4378291	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4433485	0.85[AFR][1000 genomes]
rs4454613	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4528217	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4747455	0.80[AFR][1000 genomes]
rs4748850	0.85[AFR][1000 genomes]
rs61710647	0.81[AFR][1000 genomes]
rs7907909	0.81[AFR][1000 genomes]
rs7922989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23569600-23572600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:23570400-23572400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr10:23570800-23572200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr10:23571000-23572400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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