Variant report

Variant	rs16923159
Chromosome Location	chr10:23569628-23569629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11013376	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs12248355	0.95[ASN][1000 genomes]
rs4072688	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4073300	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs60500160	0.82[ASN][1000 genomes]
rs9665636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23569200-23569800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:23569200-23570200	Enhancers	H9 Cell Line	embryonic stem cell
3	chr10:23569200-23570200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr10:23569200-23570400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr10:23569200-23570400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr10:23569200-23570400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
7	chr10:23569200-23570400	Enhancers	Brain Germinal Matrix	brain
8	chr10:23569400-23570200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr10:23569400-23570200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr10:23569400-23570400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:23569600-23570000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr10:23569600-23570000	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr10:23569600-23570400	Active TSS	H1 Cell Line	embryonic stem cell
14	chr10:23569600-23570400	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr10:23569600-23572600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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