Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23446974..23447956-chr10:23581361..23582806,8	MCF-7	breast:
2	chr10:23579291..23581537-chr10:23591941..23593830,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10764398	0.83[AFR][1000 genomes]
rs10828419	0.83[AFR][1000 genomes]
rs10828422	0.90[AFR][1000 genomes]
rs10828423	0.90[AFR][1000 genomes]
rs11013364	0.90[AFR][1000 genomes]
rs11013376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12246990	0.90[AFR][1000 genomes]
rs12266732	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16923159	0.95[ASN][1000 genomes]
rs3891382	0.83[AFR][1000 genomes]
rs4072688	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4073300	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4258280	0.87[AFR][1000 genomes]
rs4359107	0.86[AFR][1000 genomes]
rs4378291	0.82[AFR][1000 genomes]
rs4433485	0.90[AFR][1000 genomes]
rs4454613	0.82[AFR][1000 genomes]
rs4528217	0.82[AFR][1000 genomes]
rs4748850	0.90[AFR][1000 genomes]
rs56268420	0.93[AMR][1000 genomes]
rs60500160	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61710647	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907909	0.90[AFR][1000 genomes]
rs9665636	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831810	chr10:23445647-23605270	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv466834	chr10:23482635-23623523	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv550213	chr10:23482635-23623523	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23573000-23582200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:23580400-23581400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:23580600-23590800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:23580800-23581800	Weak transcription	Brain Angular Gyrus	brain
5	chr10:23580800-23582000	Weak transcription	Brain Substantia Nigra	brain
6	chr10:23580800-23582400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:23581000-23581800	Weak transcription	Brain Hippocampus Middle	brain
8	chr10:23581000-23582200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr10:23581200-23582200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:23581200-23582600	Weak transcription	Fetal Brain Male	brain

Quick Search: