Variant report

Variant	rs11013738
Chromosome Location	chr10:18634862-18634863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11013731	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013732	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11013733	0.88[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814504	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs17611161	1.00[MEX][hapmap];0.83[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046458	chr10:18629603-18683860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18630000-18639200	Weak transcription	Pancreas	Pancrea
2	chr10:18630200-18639200	Weak transcription	Ovary	ovary
3	chr10:18633800-18635000	Active TSS	Right Ventricle	heart
4	chr10:18634200-18635000	Active TSS	Liver	Liver
5	chr10:18634200-18635200	Enhancers	Fetal Heart	heart
6	chr10:18634800-18635600	Enhancers	Left Ventricle	heart
7	chr10:18634800-18640200	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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