Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1001485	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1001486	0.89[ASW][hapmap];0.95[CEU][hapmap];0.86[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10764512	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10828705	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10828706	1.00[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.87[EUR][1000 genomes]
rs10828707	1.00[CEU][hapmap];0.91[CHD][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11014262	1.00[CEU][hapmap];0.91[CHD][hapmap];0.80[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11014270	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12221045	0.80[EUR][1000 genomes]
rs12761917	0.89[EUR][1000 genomes]
rs12765646	0.83[EUR][1000 genomes]
rs12782993	0.87[EUR][1000 genomes]
rs1325988	0.91[CEU][hapmap];0.86[CHD][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes]
rs4448592	0.89[EUR][1000 genomes]
rs4747346	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4748469	0.89[EUR][1000 genomes]
rs7099509	0.87[CHB][hapmap]
rs729245	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs747296	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9299787	1.00[CEU][hapmap];0.91[CHD][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11014316	CDNF	cis	parietal	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18732400-18801600	Weak transcription	Pancreas	Pancrea
2	chr10:18739000-18752600	Weak transcription	Right Atrium	heart
3	chr10:18739000-18761000	Weak transcription	Colon Smooth Muscle	Colon
4	chr10:18741600-18763200	Weak transcription	Fetal Stomach	stomach
5	chr10:18743400-18746200	Enhancers	Dnd41	blood
6	chr10:18744400-18761800	Weak transcription	Ovary	ovary
7	chr10:18744600-18746400	Enhancers	Fetal Heart	heart
8	chr10:18744800-18745600	Enhancers	Primary B cells from cord blood	blood
9	chr10:18745000-18745800	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:18745200-18746600	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:18745200-18750800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr10:18745400-18746200	Genic enhancers	Left Ventricle	heart
13	chr10:18745400-18763200	Weak transcription	Right Ventricle	heart

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