Variant report

Variant	rs11014556
Chromosome Location	chr10:25726367-25726368
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11014521	1.00[AMR][1000 genomes]
rs11014522	1.00[AMR][1000 genomes]
rs11014557	1.00[AMR][1000 genomes]
rs11818891	1.00[AMR][1000 genomes]
rs12241693	1.00[AMR][1000 genomes]
rs12244297	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12246747	1.00[AMR][1000 genomes]
rs12261120	1.00[AMR][1000 genomes]
rs28513297	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2760120	chr10:25721094-25728594	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25725800-25730200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:25726000-25730000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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