Variant report

Variant	rs11015257
Chromosome Location	chr10:27031089-27031090
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:26985284..26987567-chr10:27030613..27032619,2	K562	blood:
2	chr10:27028106..27031090-chr10:27040562..27042712,2	K562	blood:
3	chr10:27002629..27005030-chr10:27030219..27032691,2	K562	blood:

Variant related genes	Relation type
ENSG00000234788	Chromatin interaction
ENSG00000148459	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11015256	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015264	1.00[AFR][1000 genomes]
rs11015277	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11015278	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11015282	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11015287	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11015290	0.88[AMR][1000 genomes]
rs11015297	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11015299	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11015303	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11015315	0.87[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs11015316	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11813623	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11814449	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12220354	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12220461	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs17816509	0.80[AFR][1000 genomes]
rs17816641	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1998633	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2148111	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3802615	0.86[ASN][1000 genomes]
rs3802616	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4749188	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4749190	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26987800-27031200	Weak transcription	NHDF-Ad	bronchial
2	chr10:26988000-27069600	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:26994400-27040800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:26997600-27054400	Weak transcription	Fetal Brain Male	brain
5	chr10:26999800-27037400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:27001000-27031800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:27001200-27041200	Strong transcription	Fetal Thymus	thymus
8	chr10:27001800-27041200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:27004200-27031200	Weak transcription	Hela-S3	cervix
10	chr10:27007800-27041200	Strong transcription	Dnd41	blood
11	chr10:27009600-27032200	Strong transcription	Fetal Muscle Trunk	muscle
12	chr10:27010000-27034600	Strong transcription	Thymus	Thymus
13	chr10:27011200-27047400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr10:27012000-27044400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr10:27015200-27035400	Weak transcription	Stomach Mucosa	stomach
16	chr10:27015800-27032400	Strong transcription	Fetal Stomach	stomach
17	chr10:27018000-27036400	Strong transcription	K562	blood
18	chr10:27018000-27038800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr10:27019800-27036000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr10:27020400-27035400	Strong transcription	Primary T cells from cord blood	blood
21	chr10:27021600-27069600	Weak transcription	Esophagus	oesophagus
22	chr10:27023400-27040600	Strong transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:27023400-27057800	Weak transcription	Gastric	stomach
24	chr10:27023400-27070000	Weak transcription	Pancreas	Pancrea
25	chr10:27023600-27032400	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr10:27023800-27031800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr10:27023800-27040600	Strong transcription	Duodenum Mucosa	Duodenum
28	chr10:27024000-27032200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:27024000-27032400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
30	chr10:27024000-27041000	Strong transcription	HUES64 Cell Line	embryonic stem cell
31	chr10:27024000-27047600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr10:27024000-27048000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr10:27024200-27036600	Strong transcription	A549	lung
34	chr10:27024200-27048600	Weak transcription	Fetal Heart	heart
35	chr10:27024400-27031800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr10:27024400-27041000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:27024600-27032600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
38	chr10:27024600-27041000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr10:27024800-27031200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr10:27024800-27040800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr10:27024800-27048000	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:27025000-27031800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr10:27025000-27054200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr10:27025200-27035200	Weak transcription	Fetal Kidney	kidney
45	chr10:27025600-27033400	Weak transcription	Ovary	ovary
46	chr10:27025600-27069600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:27025800-27031200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr10:27025800-27032400	Weak transcription	Brain Substantia Nigra	brain
49	chr10:27025800-27033000	Weak transcription	Placenta	Placenta
50	chr10:27025800-27039200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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