Variant report

Variant	rs11015297
Chromosome Location	chr10:27089908-27089909
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27087122..27088975-chr10:27089037..27091906,2	MCF-7	breast:
2	chr10:27089103..27090816-chr10:27092531..27095480,2	K562	blood:
3	chr10:27051583..27054295-chr10:27088139..27090891,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11015256	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11015257	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11015264	0.89[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11015277	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11015278	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11015282	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015287	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015290	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11015299	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015315	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11015316	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813623	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11814449	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12220354	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12220461	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12221372	0.83[EUR][1000 genomes]
rs17816509	0.90[AFR][1000 genomes]
rs17816641	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1998633	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2148111	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3802615	0.91[ASN][1000 genomes]
rs3802616	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4749188	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749190	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4749194	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27070800-27091800	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr10:27074800-27091600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:27074800-27091800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:27075000-27091600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
6	chr10:27079800-27091800	Weak transcription	Fetal Heart	heart
7	chr10:27079800-27092200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:27080800-27092000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:27082600-27091600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr10:27082600-27094000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:27083600-27094800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
14	chr10:27085800-27095600	Enhancers	Primary B cells from peripheral blood	blood
15	chr10:27086000-27090400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:27086000-27093400	Weak transcription	Fetal Intestine Small	intestine
17	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
18	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
19	chr10:27086800-27092000	Weak transcription	A549	lung
20	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr10:27087200-27094400	Weak transcription	Aorta	Aorta
22	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr10:27087600-27091400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:27087600-27091400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr10:27087800-27091400	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr10:27087800-27091600	Weak transcription	Psoas Muscle	Psoas
27	chr10:27088000-27091400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr10:27088000-27091600	Weak transcription	Brain Anterior Caudate	brain
29	chr10:27088000-27096000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr10:27088200-27093400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr10:27088400-27090400	Enhancers	Primary T cells fromperipheralblood	blood
33	chr10:27088400-27090800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
35	chr10:27088600-27090000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr10:27088600-27090000	Weak transcription	Brain Substantia Nigra	brain
37	chr10:27088600-27090400	Weak transcription	Brain Angular Gyrus	brain
38	chr10:27088600-27090400	Weak transcription	Brain Germinal Matrix	brain
39	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
40	chr10:27088800-27090400	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:27088800-27090400	Enhancers	Fetal Thymus	thymus
42	chr10:27089000-27090400	Enhancers	Lung	lung
43	chr10:27089000-27090600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr10:27089000-27091200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr10:27089000-27095600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
46	chr10:27089200-27090000	ZNF genes & repeats	Fetal Stomach	stomach
47	chr10:27089200-27090400	Enhancers	Primary B cells from cord blood	blood
48	chr10:27089200-27092000	Flanking Active TSS	GM12878-XiMat	blood
49	chr10:27089400-27090400	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr10:27089400-27090400	Enhancers	Left Ventricle	heart

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