Variant report

Variant	rs12221372
Chromosome Location	chr10:27095841-27095842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27095663..27097538-chr10:27098853..27101729,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10829066	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap]
rs11015264	0.96[ASN][1000 genomes]
rs11015277	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs11015278	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[TSI][hapmap]
rs11015287	1.00[CEU][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs11015290	1.00[CEU][hapmap]
rs11015297	0.83[EUR][1000 genomes]
rs11015299	1.00[CEU][hapmap];0.85[JPT][hapmap];0.86[EUR][1000 genomes]
rs11015303	0.86[EUR][1000 genomes]
rs11015339	0.82[ASN][1000 genomes]
rs11814449	0.83[EUR][1000 genomes]
rs12220354	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12220461	0.88[CEU][hapmap];0.89[GIH][hapmap];0.85[TSI][hapmap]
rs1748333	1.00[LWK][hapmap]
rs17816509	1.00[ASW][hapmap]
rs1998633	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.95[TSI][hapmap]
rs2148111	0.87[EUR][1000 genomes]
rs2252096	1.00[LWK][hapmap]
rs2505971	0.85[JPT][hapmap]
rs3802616	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs4749190	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4749194	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv933544	chr10:27005220-27111998	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27075000-27104600	Weak transcription	Esophagus	oesophagus
2	chr10:27082200-27105400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:27085600-27119000	Weak transcription	Fetal Lung	lung
4	chr10:27086200-27096600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr10:27086600-27110400	Weak transcription	Fetal Intestine Large	intestine
6	chr10:27087000-27097000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr10:27087200-27096800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr10:27088000-27096000	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr10:27088200-27100800	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:27088400-27096800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr10:27088600-27098800	Weak transcription	Pancreas	Pancrea
12	chr10:27090000-27096400	Weak transcription	Fetal Stomach	stomach
13	chr10:27090400-27097400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:27090600-27096800	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:27091800-27113200	Weak transcription	Placenta	Placenta
16	chr10:27092200-27099600	Weak transcription	Primary neutrophils fromperipheralblood	blood
17	chr10:27092600-27096400	Weak transcription	HepG2	liver
18	chr10:27093000-27096800	Enhancers	Small Intestine	intestine
19	chr10:27093400-27112400	Weak transcription	Left Ventricle	heart
20	chr10:27093600-27096000	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr10:27093600-27103000	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:27093800-27096600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr10:27094000-27096800	Enhancers	Primary T cells fromperipheralblood	blood
24	chr10:27094000-27108000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr10:27094200-27096200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:27094600-27096000	Genic enhancers	Primary T cells from cord blood	blood
27	chr10:27094600-27096800	Enhancers	Dnd41	blood
28	chr10:27094600-27099000	Weak transcription	A549	lung
29	chr10:27094600-27099400	Weak transcription	Fetal Muscle Leg	muscle
30	chr10:27094600-27108400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:27094600-27111200	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:27094800-27096000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr10:27094800-27104400	Weak transcription	Psoas Muscle	Psoas
34	chr10:27094800-27108000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr10:27094800-27111200	Weak transcription	Ovary	ovary
36	chr10:27095000-27096800	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
37	chr10:27095000-27130600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr10:27095000-27138600	Weak transcription	Fetal Muscle Trunk	muscle
39	chr10:27095200-27096400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:27095200-27096600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:27095200-27096600	Weak transcription	Adipose Nuclei	Adipose
42	chr10:27095200-27099400	Weak transcription	Fetal Intestine Small	intestine
43	chr10:27095200-27105000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr10:27095200-27106600	Weak transcription	Osteobl	bone
45	chr10:27095200-27110800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr10:27095200-27119000	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:27095400-27099000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr10:27095400-27104400	Weak transcription	Brain Cingulate Gyrus	brain
49	chr10:27095400-27110800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:27095400-27111200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links