Variant report

Variant	rs4749194
Chromosome Location	chr10:27151305-27151306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26986021..26987940-chr10:27149008..27151636,2	MCF-7	breast:
2	chr10:27149519..27151430-chr10:27442633..27444807,2	K562	blood:

Variant related genes	Relation type
ENSG00000148459	Chromatin interaction
ENSG00000136758	Chromatin interaction
ENSG00000120539	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10829066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11015244	1.00[YRI][hapmap]
rs11015277	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11015278	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11015282	0.84[AMR][1000 genomes]
rs11015287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11015290	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs11015297	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11015299	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11015303	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs11015315	0.90[AMR][1000 genomes]
rs11015316	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11813623	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11814449	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12220354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12220461	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12221372	1.00[CEU][hapmap]
rs17816509	1.00[YRI][hapmap]
rs17816641	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1998633	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2148111	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2505971	1.00[JPT][hapmap]
rs3802616	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs4749188	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749190	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4749193	0.84[EUR][1000 genomes]
rs7910986	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415799	chr10:26929831-27233591	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831812	chr10:27061506-27234267	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv971858	chr10:27066006-27157708	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27150000-27153600	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr10:27150000-27155400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:27150600-27152600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr10:27150600-27153000	Weak transcription	Right Atrium	heart
5	chr10:27150800-27151800	Weak transcription	Fetal Brain Female	brain
6	chr10:27150800-27152200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:27150800-27155600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:27150800-27155800	Weak transcription	NHEK	skin
9	chr10:27150800-27157200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:27150800-27157800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr10:27150800-27157800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr10:27151000-27151800	Weak transcription	Pancreas	Pancrea
13	chr10:27151000-27152000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:27151000-27152600	Weak transcription	Primary monocytes fromperipheralblood	blood

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