Variant report

Variant	rs11015853
Chromosome Location	chr10:27824468-27824469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27823562..27825095-chr10:27831336..27833664,2	MCF-7	breast:
2	chr10:27823448..27828239-chr10:27829759..27835759,6	K562	blood:
3	chr10:27814281..27821266-chr10:27824273..27827197,8	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10437434	0.88[AFR][1000 genomes]
rs10508723	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11015830	0.85[AMR][1000 genomes]
rs11015838	0.88[AFR][1000 genomes]
rs11015844	0.80[AFR][1000 genomes]
rs11015848	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11015850	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11015851	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11015852	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12242968	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12248740	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12249534	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12253290	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12254670	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12258435	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12260532	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12261373	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12261690	0.88[AFR][1000 genomes]
rs12263216	0.88[AFR][1000 genomes]
rs12267298	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2368234	0.88[AFR][1000 genomes]
rs59498921	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs60909738	0.88[AFR][1000 genomes]
rs61486615	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9651381	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
3	chr10:27801800-27829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:27803400-27830800	Weak transcription	Hela-S3	cervix
5	chr10:27814200-27836000	Weak transcription	Brain Germinal Matrix	brain
6	chr10:27815000-27831000	Weak transcription	Fetal Heart	heart
7	chr10:27815000-27834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:27815600-27831600	Weak transcription	Psoas Muscle	Psoas
9	chr10:27816800-27826600	Weak transcription	Brain Substantia Nigra	brain
10	chr10:27817600-27826000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr10:27818400-27828000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:27818800-27825200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:27818800-27830800	Weak transcription	Stomach Mucosa	stomach
14	chr10:27820400-27829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:27820400-27835200	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr10:27820600-27829400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr10:27821400-27828600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:27821400-27829600	Strong transcription	HSMM	muscle
19	chr10:27821800-27825200	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr10:27821800-27825200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
21	chr10:27821800-27828200	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:27821800-27829600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:27821800-27830000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr10:27822000-27827000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:27822000-27828400	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr10:27822200-27824800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:27822200-27824800	Strong transcription	NHDF-Ad	bronchial
28	chr10:27822200-27826400	Strong transcription	A549	lung
29	chr10:27822200-27830000	Strong transcription	Primary B cells from cord blood	blood
30	chr10:27822200-27835200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:27822400-27824600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr10:27822400-27828400	Strong transcription	HMEC	breast
33	chr10:27822400-27829400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr10:27822400-27831600	Strong transcription	Osteobl	bone
35	chr10:27822400-27832000	Strong transcription	Primary B cells from peripheral blood	blood
36	chr10:27822600-27824600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr10:27822600-27824600	Strong transcription	Cortex derived primary cultured neurospheres	brain
38	chr10:27822600-27824600	Strong transcription	K562	blood
39	chr10:27822600-27825200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:27822600-27827800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr10:27822600-27827800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr10:27822600-27827800	Strong transcription	HepG2	liver
43	chr10:27822600-27828000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr10:27822600-27828000	Strong transcription	Fetal Lung	lung
45	chr10:27822600-27828200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr10:27822600-27828600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr10:27822600-27829200	Strong transcription	Placenta	Placenta
48	chr10:27822600-27829400	Strong transcription	Liver	Liver
49	chr10:27822600-27830200	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr10:27822600-27832400	Strong transcription	Adipose Nuclei	Adipose

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