Variant report

Variant	rs11015830
Chromosome Location	chr10:27800731-27800732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27799337..27801640-chr10:27835012..27836512,2	K562	blood:
2	chr10:27799672..27801387-chr10:27805643..27808469,2	MCF-7	breast:
3	chr10:27792936..27797096-chr10:27798053..27803515,8	K562	blood:
4	chr10:27793040..27797824-chr10:27798182..27803783,7	K562	blood:
5	chr10:27798609..27800885-chr10:27819164..27820782,2	K562	blood:
6	chr10:27800400..27804352-chr10:27805860..27809285,4	K562	blood:

Variant related genes	Relation type
ENSG00000099246	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10437434	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs10508723	0.86[ASW][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10764699	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11015838	0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11015842	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs11015844	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11015848	0.82[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015850	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015851	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015852	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015853	0.85[AMR][1000 genomes]
rs11015859	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs12242968	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12248740	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12249534	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12253290	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12254670	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12258435	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12260532	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261373	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12261690	0.86[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12263216	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12267298	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2368234	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs59498921	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60909738	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61486615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9651381	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11015830	RAB18	cis	lymphoblastoid	seeQTL

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794000-27801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:27794200-27803800	Weak transcription	Lung	lung
3	chr10:27794200-27806800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:27794200-27817000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:27794400-27824000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr10:27794800-27800800	Weak transcription	Right Ventricle	heart
8	chr10:27794800-27802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:27794800-27802400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:27794800-27814200	Weak transcription	Ovary	ovary
11	chr10:27794800-27814600	Weak transcription	HSMMtube	muscle
12	chr10:27794800-27822800	Weak transcription	Colonic Mucosa	Colon
13	chr10:27794800-27823200	Weak transcription	Esophagus	oesophagus
14	chr10:27794800-27823200	Weak transcription	Spleen	Spleen
15	chr10:27795000-27800800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:27795000-27802800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:27795000-27806000	Weak transcription	Fetal Kidney	kidney
18	chr10:27795000-27813000	Weak transcription	Right Atrium	heart
19	chr10:27795200-27802400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:27795200-27813800	Weak transcription	Fetal Brain Male	brain
21	chr10:27795200-27816800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr10:27795400-27802400	Weak transcription	Fetal Brain Female	brain
23	chr10:27795600-27801400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr10:27795600-27801400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr10:27795600-27802400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr10:27795600-27802600	Weak transcription	Brain Angular Gyrus	brain
27	chr10:27795600-27814800	Weak transcription	Pancreas	Pancrea
28	chr10:27795600-27816800	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:27795800-27801600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr10:27795800-27802600	Weak transcription	Brain Substantia Nigra	brain
31	chr10:27795800-27803000	Weak transcription	NHLF	lung
32	chr10:27795800-27803800	Weak transcription	Aorta	Aorta
33	chr10:27795800-27822600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
35	chr10:27796000-27814600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr10:27796200-27801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr10:27796200-27804200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr10:27796400-27801600	Weak transcription	NHDF-Ad	bronchial
39	chr10:27796400-27802400	Weak transcription	HepG2	liver
40	chr10:27796400-27803400	Strong transcription	Primary B cells from peripheral blood	blood
41	chr10:27796400-27805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr10:27796800-27801200	Weak transcription	Left Ventricle	heart
43	chr10:27796800-27802600	Weak transcription	Gastric	stomach
44	chr10:27796800-27804800	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr10:27798000-27804000	Strong transcription	Primary B cells from cord blood	blood
46	chr10:27798200-27800800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
47	chr10:27798200-27801800	Strong transcription	NH-A	brain
48	chr10:27798200-27802200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr10:27798200-27802400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr10:27798400-27800800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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