Variant report

Variant	rs11015859
Chromosome Location	chr10:27826951-27826952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:27823448..27828239-chr10:27829759..27835759,6	K562	blood:
2	chr10:27814281..27821266-chr10:27824273..27827197,8	K562	blood:
3	chr10:27825533..27827174-chr10:27829360..27830870,2	MCF-7	breast:
4	chr10:27803807..27806006-chr10:27825397..27828002,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10047336	1.00[AMR][1000 genomes]
rs10508723	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs11015830	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs11015834	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015835	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11015850	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs12248740	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs12261373	1.00[MEX][hapmap]
rs12261690	1.00[MEX][hapmap];0.83[MKK][hapmap]
rs60532659	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11015859	RAB18	cis	lymphoblastoid	seeQTL
rs11015859	BCR	trans	lymphoblastoid	seeQTL

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:27795800-27832600	Weak transcription	Small Intestine	intestine
3	chr10:27801800-27829000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr10:27803400-27830800	Weak transcription	Hela-S3	cervix
5	chr10:27814200-27836000	Weak transcription	Brain Germinal Matrix	brain
6	chr10:27815000-27831000	Weak transcription	Fetal Heart	heart
7	chr10:27815000-27834400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:27815600-27831600	Weak transcription	Psoas Muscle	Psoas
9	chr10:27818400-27828000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:27818800-27830800	Weak transcription	Stomach Mucosa	stomach
11	chr10:27820400-27829400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr10:27820400-27835200	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr10:27820600-27829400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr10:27821400-27828600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr10:27821400-27829600	Strong transcription	HSMM	muscle
16	chr10:27821800-27828200	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr10:27821800-27829600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:27821800-27830000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:27822000-27827000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:27822000-27828400	Strong transcription	Primary T helper cells PMA-I stimulated	--
21	chr10:27822200-27830000	Strong transcription	Primary B cells from cord blood	blood
22	chr10:27822200-27835200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:27822400-27828400	Strong transcription	HMEC	breast
24	chr10:27822400-27829400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:27822400-27831600	Strong transcription	Osteobl	bone
26	chr10:27822400-27832000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr10:27822600-27827800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr10:27822600-27827800	Strong transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:27822600-27827800	Strong transcription	HepG2	liver
30	chr10:27822600-27828000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:27822600-27828000	Strong transcription	Fetal Lung	lung
32	chr10:27822600-27828200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr10:27822600-27828600	Strong transcription	Duodenum Mucosa	Duodenum
34	chr10:27822600-27829200	Strong transcription	Placenta	Placenta
35	chr10:27822600-27829400	Strong transcription	Liver	Liver
36	chr10:27822600-27830200	Strong transcription	Muscle Satellite Cultured Cells	--
37	chr10:27822600-27832400	Strong transcription	Adipose Nuclei	Adipose
38	chr10:27822600-27832400	Strong transcription	Dnd41	blood
39	chr10:27822600-27832800	Strong transcription	Primary neutrophils fromperipheralblood	blood
40	chr10:27822800-27827200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr10:27822800-27827400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:27822800-27828000	Strong transcription	Primary T cells from cord blood	blood
43	chr10:27822800-27828000	Strong transcription	Fetal Thymus	thymus
44	chr10:27822800-27828000	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr10:27822800-27828200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr10:27822800-27828200	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr10:27822800-27828400	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr10:27822800-27828800	Strong transcription	Primary hematopoietic stem cells	blood
49	chr10:27823000-27827200	Strong transcription	Rectal Smooth Muscle	rectum
50	chr10:27823000-27827800	Strong transcription	Fetal Intestine Large	intestine

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