Variant report

Variant	rs11020354
Chromosome Location	chr11:93161915-93161916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1004417	0.86[CHB][hapmap]
rs10741464	0.81[ASN][1000 genomes]
rs10831032	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs10831033	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs10831046	0.95[CHB][hapmap]
rs11020298	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs11020301	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs11020303	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs11020304	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs11020305	0.85[ASN][1000 genomes]
rs11020306	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs11020311	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs11020313	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs11020314	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs11020315	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11020316	0.86[ASN][1000 genomes]
rs11020356	0.95[CHB][hapmap]
rs11020357	0.95[CHB][hapmap]
rs12271165	0.80[CHB][hapmap];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12276463	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs12276820	0.83[ASN][1000 genomes]
rs12280126	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs12281366	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs12283758	0.84[ASN][1000 genomes]
rs12284477	0.84[ASN][1000 genomes]
rs12284622	0.85[ASN][1000 genomes]
rs12284681	0.85[ASN][1000 genomes]
rs12285123	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs12285128	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs12286273	0.85[ASN][1000 genomes]
rs12286814	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs12287849	0.80[CHB][hapmap];0.83[ASN][1000 genomes]
rs12288277	0.80[CHB][hapmap]
rs12288686	0.80[CHB][hapmap]
rs12289685	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs12289847	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs12290433	0.80[CHB][hapmap]
rs12292451	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs12292876	0.80[CHB][hapmap];0.85[ASN][1000 genomes]
rs12293300	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs12293344	0.80[CHB][hapmap];0.82[ASN][1000 genomes]
rs1456236	0.80[CHB][hapmap];0.84[ASN][1000 genomes]
rs2259469	0.86[CHB][hapmap]
rs2605576	0.86[CHB][hapmap]
rs2605578	0.86[CHB][hapmap]
rs2605579	0.86[CHB][hapmap]
rs2658774	0.86[CHB][hapmap]
rs2925353	0.86[CHB][hapmap]
rs57942067	0.85[ASN][1000 genomes]
rs60727319	0.87[ASN][1000 genomes]
rs7127240	0.81[ASN][1000 genomes]
rs7131487	0.81[ASN][1000 genomes]
rs72972371	0.82[ASN][1000 genomes]
rs7949734	0.80[CHB][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7949990	0.80[CHB][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv555941	chr11:93129893-93181050	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv439	chr11:93135936-93171682	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv508649	chr11:93140899-93181092	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	esv3373708	chr11:93159508-93162027	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93161600-93162200	Enhancers	Dnd41	blood

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