Variant report

Variant	rs7131487
Chromosome Location	chr11:93185952-93185953
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10741464	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10831029	0.84[CHD][hapmap]
rs10831032	0.80[CHB][hapmap]
rs10831033	0.81[CHB][hapmap]
rs10831046	0.95[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap]
rs11020298	0.81[CHB][hapmap]
rs11020301	0.81[CHB][hapmap]
rs11020303	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs11020304	0.81[CHB][hapmap]
rs11020306	0.81[CHB][hapmap]
rs11020311	0.81[CHB][hapmap]
rs11020313	0.81[CHB][hapmap]
rs11020314	0.81[CHB][hapmap]
rs11020316	0.84[JPT][hapmap]
rs11020354	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs11020356	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs11020357	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs12271165	0.81[CHB][hapmap]
rs12276463	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs12277063	0.84[CHD][hapmap]
rs12280126	0.88[CHB][hapmap]
rs12281366	0.81[CHB][hapmap]
rs12285123	0.81[CHB][hapmap]
rs12285128	0.81[CHB][hapmap]
rs12286814	0.81[CHB][hapmap];0.86[CHD][hapmap]
rs12287849	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs12288277	0.81[CHB][hapmap]
rs12288686	0.81[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs12289685	0.81[CHB][hapmap]
rs12290433	0.81[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap]
rs12292451	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs12292876	0.81[CHB][hapmap]
rs12293300	0.80[CHB][hapmap]
rs12293344	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs1456236	0.81[CHB][hapmap]
rs7127240	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7949734	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs7949990	0.81[CHB][hapmap];0.89[CHD][hapmap]
rs977255	0.86[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7131487	BRI3	trans	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93183600-93191400	Weak transcription	Pancreas	Pancrea

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