Variant report

Variant	rs11020375
Chromosome Location	chr11:93209910-93209911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93208394..93211665-chr11:93212462..93214583,3	K562	blood:
2	chr11:93207837..93211665-chr11:93212899..93215051,4	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11020369	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020372	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11020376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020380	1.00[AMR][1000 genomes]
rs11020385	1.00[AMR][1000 genomes]
rs11020386	1.00[AMR][1000 genomes]
rs11020391	1.00[AMR][1000 genomes]
rs11020397	1.00[AMR][1000 genomes]
rs11020398	1.00[AMR][1000 genomes]
rs11020399	1.00[AMR][1000 genomes]
rs11020400	1.00[AMR][1000 genomes]
rs11020401	1.00[AMR][1000 genomes]
rs11020402	1.00[AMR][1000 genomes]
rs3750951	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93200600-93214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:93206200-93210600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:93206800-93210600	Weak transcription	Fetal Intestine Large	intestine
4	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:93207400-93210600	Weak transcription	Spleen	Spleen
6	chr11:93207600-93210200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:93207600-93210400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:93207600-93211000	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:93207800-93210200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:93207800-93210200	Weak transcription	Fetal Lung	lung
11	chr11:93207800-93210800	Weak transcription	Pancreas	Pancrea
12	chr11:93207800-93220000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:93208200-93223200	Weak transcription	GM12878-XiMat	blood
14	chr11:93208400-93210000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr11:93208400-93212000	Weak transcription	Ovary	ovary
16	chr11:93208400-93218400	Weak transcription	Left Ventricle	heart
17	chr11:93208600-93217800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr11:93208800-93210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:93208800-93210400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:93208800-93213000	Strong transcription	Liver	Liver
21	chr11:93209000-93210600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr11:93209000-93214200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:93209000-93231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr11:93209000-93235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:93209200-93210000	Strong transcription	Fetal Stomach	stomach
26	chr11:93209200-93210800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr11:93209200-93211000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:93209200-93213200	Weak transcription	Small Intestine	intestine
29	chr11:93209200-93215000	Weak transcription	Right Ventricle	heart
30	chr11:93209200-93229200	Weak transcription	Dnd41	blood
31	chr11:93209400-93210400	Weak transcription	Adipose Nuclei	Adipose
32	chr11:93209400-93210600	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr11:93209400-93210600	Enhancers	NHEK	skin
34	chr11:93209400-93211000	Enhancers	Hela-S3	cervix
35	chr11:93209400-93214200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:93209400-93215000	Weak transcription	Right Atrium	heart
37	chr11:93209400-93218800	Strong transcription	Fetal Intestine Small	intestine
38	chr11:93209600-93210600	Weak transcription	Lung	lung
39	chr11:93209600-93210600	Enhancers	A549	lung
40	chr11:93209600-93211200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:93209600-93211600	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:93209600-93211800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:93209600-93212000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:93209600-93213000	Enhancers	H1 Cell Line	embryonic stem cell
45	chr11:93209600-93214800	Strong transcription	Aorta	Aorta
46	chr11:93209600-93229400	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr11:93209800-93210000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:93209800-93210600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr11:93209800-93210800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr11:93209800-93211600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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