Variant report

Variant	rs11020397
Chromosome Location	chr11:93252433-93252434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10831050	0.82[ASN][1000 genomes]
rs11020369	1.00[AMR][1000 genomes]
rs11020372	1.00[AMR][1000 genomes]
rs11020375	1.00[AMR][1000 genomes]
rs11020376	1.00[AMR][1000 genomes]
rs11020380	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11020381	0.82[ASN][1000 genomes]
rs11020385	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11020386	1.00[AMR][1000 genomes]
rs11020391	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11020398	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020399	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020400	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020401	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11020402	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs3750951	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93211000-93253400	Weak transcription	Primary T cells from cord blood	blood
2	chr11:93218600-93254400	Weak transcription	Hela-S3	cervix
3	chr11:93226400-93257400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr11:93227200-93257600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:93233000-93257400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr11:93235400-93257800	Weak transcription	Gastric	stomach
7	chr11:93235600-93258800	Weak transcription	Small Intestine	intestine
8	chr11:93235800-93252600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr11:93238400-93259000	Weak transcription	Fetal Lung	lung
10	chr11:93239600-93255600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:93241000-93254200	Weak transcription	HepG2	liver
12	chr11:93241800-93257400	Weak transcription	Fetal Intestine Large	intestine
13	chr11:93243800-93255600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:93244000-93254400	Weak transcription	Pancreas	Pancrea
15	chr11:93244200-93253800	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:93244800-93254000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr11:93248000-93261800	Weak transcription	Fetal Stomach	stomach
18	chr11:93248800-93257400	Weak transcription	Adipose Nuclei	Adipose
19	chr11:93249000-93252600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr11:93249000-93261600	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr11:93249200-93253600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:93249200-93253600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:93249200-93254400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr11:93249200-93254400	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr11:93249200-93255400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:93249200-93255600	Weak transcription	Left Ventricle	heart
27	chr11:93249200-93255600	Weak transcription	Right Ventricle	heart
28	chr11:93249200-93257600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:93249200-93257600	Weak transcription	Placenta	Placenta
30	chr11:93249200-93257800	Weak transcription	Right Atrium	heart
31	chr11:93249400-93254200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr11:93249600-93253400	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:93250200-93254000	Enhancers	GM12878-XiMat	blood
34	chr11:93250600-93253000	Enhancers	NHEK	skin
35	chr11:93250600-93254000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr11:93250600-93255400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr11:93250800-93253200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr11:93250800-93254400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:93250800-93255400	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr11:93251000-93254200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr11:93251000-93258200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr11:93251000-93261400	Weak transcription	Fetal Brain Male	brain
43	chr11:93251000-93261600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:93251000-93261600	Weak transcription	Aorta	Aorta
45	chr11:93251200-93252800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr11:93251200-93255400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr11:93251200-93255400	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:93251800-93253400	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr11:93251800-93255000	Enhancers	Thymus	Thymus
50	chr11:93252000-93253800	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links