Variant report

Variant	rs11020406
Chromosome Location	chr11:93266769-93266770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93262595..93264552-chr11:93264868..93267737,2	K562	blood:
2	chr11:93263943..93267272-chr11:93267950..93271031,3	K562	blood:

Variant related genes	Relation type
ENSG00000234106	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11020405	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1840695	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs986134	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93252000-93266800	Enhancers	Fetal Thymus	thymus
2	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
3	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:93262400-93269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:93262400-93271000	Weak transcription	Aorta	Aorta
6	chr11:93263000-93270600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr11:93263200-93269400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr11:93263200-93275200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr11:93263400-93267800	Weak transcription	Fetal Brain Male	brain
10	chr11:93263400-93268600	Weak transcription	HUVEC	blood vessel
11	chr11:93263400-93269200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:93263400-93269600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:93263400-93269600	Enhancers	Liver	Liver
14	chr11:93263600-93268400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:93263600-93268600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:93263600-93268800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:93263600-93268800	Weak transcription	Brain Hippocampus Middle	brain
18	chr11:93263600-93269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr11:93263600-93270000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:93263600-93270200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:93263600-93271200	Weak transcription	Esophagus	oesophagus
22	chr11:93263800-93269400	Weak transcription	Fetal Lung	lung
23	chr11:93263800-93269600	Weak transcription	Brain Angular Gyrus	brain
24	chr11:93263800-93270200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:93263800-93270800	Weak transcription	K562	blood
26	chr11:93264000-93268000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:93264000-93268000	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:93264000-93268400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:93264000-93269200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr11:93264000-93269400	Weak transcription	Stomach Smooth Muscle	stomach
31	chr11:93264000-93269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr11:93264000-93270000	Weak transcription	Osteobl	bone
33	chr11:93264000-93270200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:93264000-93270200	Weak transcription	Colonic Mucosa	Colon
35	chr11:93264000-93270200	Weak transcription	Spleen	Spleen
36	chr11:93264000-93270400	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:93264000-93270800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:93264000-93271600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr11:93264000-93275000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:93264000-93275000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr11:93264000-93275200	Weak transcription	HSMMtube	muscle
42	chr11:93264200-93268200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:93264200-93268400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:93264200-93269400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr11:93264200-93270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr11:93264200-93273200	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:93264200-93275000	Weak transcription	Fetal Intestine Large	intestine
48	chr11:93264400-93268200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
49	chr11:93264400-93269400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:93264600-93267800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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