Variant report

Variant	rs1840695
Chromosome Location	chr11:93264389-93264390
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:93256846..93259343-chr11:93261721..93264520,2	K562	blood:
2	chr11:93263943..93267272-chr11:93267950..93271031,3	K562	blood:
3	chr11:93262595..93264552-chr11:93264868..93267737,2	K562	blood:

Variant related genes	Relation type
ENSG00000234106	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11020405	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11020406	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2605630	0.95[AFR][1000 genomes]
rs2608271	0.93[AFR][1000 genomes]
rs2658772	0.95[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs986134	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93252000-93266800	Enhancers	Fetal Thymus	thymus
2	chr11:93253800-93266200	Weak transcription	Fetal Brain Female	brain
3	chr11:93255000-93274600	Weak transcription	Hela-S3	cervix
4	chr11:93256200-93266000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr11:93256400-93266600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:93257200-93264800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr11:93257400-93264800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:93257400-93266600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:93257600-93264400	Enhancers	Fetal Muscle Leg	muscle
10	chr11:93258000-93264600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr11:93258200-93266400	Enhancers	Primary T cells from cord blood	blood
12	chr11:93258400-93274800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr11:93260400-93266600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr11:93261600-93264400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:93261600-93264600	Enhancers	Gastric	stomach
16	chr11:93261600-93264600	Enhancers	Left Ventricle	heart
17	chr11:93261600-93264600	Enhancers	Pancreas	Pancrea
18	chr11:93261600-93264600	Enhancers	Stomach Mucosa	stomach
19	chr11:93262400-93264600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:93262400-93269600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:93262400-93271000	Weak transcription	Aorta	Aorta
22	chr11:93262600-93264400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr11:93262600-93265800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:93262600-93265800	Enhancers	Dnd41	blood
25	chr11:93262800-93266000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr11:93263000-93264600	Enhancers	Fetal Intestine Small	intestine
27	chr11:93263000-93264600	Flanking Active TSS	HepG2	liver
28	chr11:93263000-93264800	Enhancers	Thymus	Thymus
29	chr11:93263000-93266200	Weak transcription	Fetal Stomach	stomach
30	chr11:93263000-93270600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:93263200-93264600	Flanking Active TSS	GM12878-XiMat	blood
32	chr11:93263200-93269400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr11:93263200-93275200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:93263400-93267800	Weak transcription	Fetal Brain Male	brain
35	chr11:93263400-93268600	Weak transcription	HUVEC	blood vessel
36	chr11:93263400-93269200	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:93263400-93269600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr11:93263400-93269600	Enhancers	Liver	Liver
39	chr11:93263600-93264600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr11:93263600-93264600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr11:93263600-93264600	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr11:93263600-93265400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr11:93263600-93265800	Weak transcription	Brain Anterior Caudate	brain
44	chr11:93263600-93268400	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr11:93263600-93268600	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:93263600-93268800	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr11:93263600-93268800	Weak transcription	Brain Hippocampus Middle	brain
48	chr11:93263600-93269800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:93263600-93270000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr11:93263600-93270200	Weak transcription	Fetal Muscle Trunk	muscle

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