Variant report

Variant	rs11020541
Chromosome Location	chr11:93583590-93583591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10444215	0.82[EUR][1000 genomes]
rs11020550	0.82[EUR][1000 genomes]
rs11020552	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11020571	0.82[EUR][1000 genomes]
rs11020574	0.82[EUR][1000 genomes]
rs11511818	0.82[EUR][1000 genomes]
rs12361298	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12362605	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12795465	0.82[EUR][1000 genomes]
rs7108351	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93578400-93583800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr11:93582600-93584200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:93582600-93584200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:93582600-93584200	Enhancers	NHDF-Ad	bronchial
5	chr11:93582800-93583600	Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr11:93582800-93583600	Active TSS	Pancreas	Pancrea
7	chr11:93582800-93583800	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr11:93582800-93583800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr11:93582800-93583800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:93582800-93583800	Enhancers	Liver	Liver
11	chr11:93582800-93583800	Active TSS	Brain Cingulate Gyrus	brain
12	chr11:93582800-93583800	Active TSS	Brain Inferior Temporal Lobe	brain
13	chr11:93582800-93584000	Active TSS	Brain Angular Gyrus	brain
14	chr11:93582800-93584000	Active TSS	Colon Smooth Muscle	Colon
15	chr11:93582800-93584000	Active TSS	Rectal Smooth Muscle	rectum
16	chr11:93582800-93584200	Enhancers	Fetal Brain Male	brain
17	chr11:93582800-93584200	Active TSS	Fetal Kidney	kidney
18	chr11:93582800-93584200	Active TSS	Fetal Lung	lung
19	chr11:93583000-93583600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
20	chr11:93583000-93583600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr11:93583000-93583600	Active TSS	Breast Myoepithelial Primary Cells	Breast
22	chr11:93583000-93583600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr11:93583000-93583600	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr11:93583000-93583600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:93583000-93583600	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr11:93583000-93583600	Active TSS	Ovary	ovary
27	chr11:93583000-93583600	Flanking Active TSS	NHEK	skin
28	chr11:93583000-93583600	Active TSS	NHLF	lung
29	chr11:93583000-93583800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:93583000-93583800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:93583000-93583800	Active TSS	HUES6 Cell Line	embryonic stem cell
32	chr11:93583000-93583800	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr11:93583000-93583800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
34	chr11:93583000-93583800	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
35	chr11:93583000-93583800	Active TSS	Muscle Satellite Cultured Cells	--
36	chr11:93583000-93583800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
37	chr11:93583000-93583800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr11:93583000-93583800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr11:93583000-93583800	Active TSS	Aorta	Aorta
40	chr11:93583000-93583800	Active TSS	Brain Anterior Caudate	brain
41	chr11:93583000-93583800	Active TSS	Left Ventricle	heart
42	chr11:93583000-93583800	Active TSS	Right Atrium	heart
43	chr11:93583000-93583800	Active TSS	Right Ventricle	heart
44	chr11:93583000-93583800	Active TSS	A549	lung
45	chr11:93583000-93584000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr11:93583000-93584000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:93583000-93584000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr11:93583000-93584000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr11:93583000-93584000	Active TSS	Duodenum Smooth Muscle	Duodenum
50	chr11:93583000-93584200	Active TSS	Fetal Brain Female	brain

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