Variant report

Variant	rs11020550
Chromosome Location	chr11:93587551-93587552
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10444215	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831143	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11020541	0.82[EUR][1000 genomes]
rs11020552	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020571	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020574	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11020588	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11511818	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12361298	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12362605	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12795465	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7108351	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv898182	chr11:93381845-93637462	Strong transcription Genic enhancers Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	108 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93583800-93588800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr11:93584000-93591000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:93584200-93588600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr11:93584200-93590600	Weak transcription	Fetal Brain Male	brain
5	chr11:93584400-93590600	Weak transcription	Aorta	Aorta
6	chr11:93586400-93589600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr11:93586800-93589600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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