Variant report

Variant	rs11020927
Chromosome Location	chr11:94465513-94465514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11020824	1.00[MEX][hapmap]
rs12291566	1.00[TSI][hapmap]
rs12293091	1.00[EUR][1000 genomes]
rs12294255	1.00[MEX][hapmap]
rs12808355	1.00[TSI][hapmap]
rs2068909	1.00[EUR][1000 genomes]
rs4593975	1.00[EUR][1000 genomes]
rs687688	1.00[EUR][1000 genomes]
rs73523954	1.00[EUR][1000 genomes]
rs73525821	1.00[EUR][1000 genomes]
rs73525842	1.00[EUR][1000 genomes]
rs73525844	1.00[EUR][1000 genomes]
rs73525853	1.00[EUR][1000 genomes]
rs73525861	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832234	chr11:94462190-94611845	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv898186	chr11:94463093-94611845	Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94455400-94467800	Weak transcription	Psoas Muscle	Psoas
2	chr11:94458600-94473200	Weak transcription	Esophagus	oesophagus
3	chr11:94461200-94468200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:94461400-94473200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:94461400-94473400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr11:94462000-94466000	Enhancers	Placenta	Placenta
7	chr11:94462000-94470600	Genic enhancers	NHEK	skin
8	chr11:94462200-94466800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
9	chr11:94462200-94468000	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:94462400-94466000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr11:94462400-94469600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:94462800-94467200	Weak transcription	Fetal Intestine Small	intestine
13	chr11:94463000-94467200	Weak transcription	Fetal Intestine Large	intestine
14	chr11:94463200-94466200	Enhancers	NHDF-Ad	bronchial
15	chr11:94463200-94466800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:94463200-94468000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr11:94463400-94466200	Genic enhancers	Skeletal Muscle Male	skeletal muscle
18	chr11:94463600-94468600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr11:94464000-94466000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:94464200-94466200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:94464200-94467600	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr11:94464400-94465800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:94464400-94467000	Enhancers	Left Ventricle	heart
24	chr11:94464400-94468000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:94464600-94466400	Enhancers	HMEC	breast
26	chr11:94464800-94466000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:94464800-94466000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr11:94464800-94466200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:94464800-94466800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:94464800-94469000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr11:94464800-94469200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
32	chr11:94464800-94469200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr11:94465000-94465600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:94465000-94465800	Enhancers	HSMM	muscle
35	chr11:94465000-94465800	Enhancers	HSMMtube	muscle
36	chr11:94465000-94466000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr11:94465000-94466000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr11:94465000-94466000	Enhancers	Brain Angular Gyrus	brain
39	chr11:94465000-94466200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr11:94465000-94466200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr11:94465000-94466200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:94465000-94466200	Enhancers	Fetal Stomach	stomach
43	chr11:94465000-94466200	Enhancers	Placenta Amnion	Placenta Amnion
44	chr11:94465000-94466200	Enhancers	Spleen	Spleen
45	chr11:94465000-94466400	Enhancers	H9 Cell Line	embryonic stem cell
46	chr11:94465000-94466400	Enhancers	Fetal Muscle Leg	muscle
47	chr11:94465000-94466400	Enhancers	NH-A	brain
48	chr11:94465000-94466400	Enhancers	NHLF	lung
49	chr11:94465000-94466400	Enhancers	Osteobl	bone
50	chr11:94465000-94467000	Enhancers	H1 Cell Line	embryonic stem cell

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