Variant report

Variant	rs11023717
Chromosome Location	chr11:15803262-15803263
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1545896	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4462300	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11023717	KCNC1	cis	cerebellum	SCAN
rs11023717	SAA3P	cis	parietal	SCAN
rs11023717	PARVA	cis	parietal	SCAN
rs11023717	TEAD1	cis	cerebellum	SCAN
rs11023717	C7orf47	trans	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15792600-15805000	Weak transcription	Gastric	stomach
2	chr11:15797000-15805600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:15798000-15803400	Weak transcription	Placenta	Placenta
4	chr11:15801200-15803400	Enhancers	Fetal Muscle Leg	muscle
5	chr11:15801400-15803800	Enhancers	Fetal Lung	lung
6	chr11:15802000-15804400	Enhancers	Ovary	ovary
7	chr11:15802600-15805000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:15802800-15803400	Enhancers	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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