Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1026949	0.92[ASN][1000 genomes]
rs1026950	0.92[ASN][1000 genomes]
rs10832515	0.85[ASN][1000 genomes]
rs11023706	0.84[ASN][1000 genomes]
rs11023707	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs11023709	0.90[ASN][1000 genomes]
rs11023717	0.83[EUR][1000 genomes]
rs11023721	0.83[EUR][1000 genomes]
rs12362658	0.84[EUR][1000 genomes]
rs12422116	0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1484434	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1484435	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1545896	0.83[EUR][1000 genomes]
rs1601250	0.90[ASN][1000 genomes]
rs1601251	0.86[CHB][hapmap];0.81[JPT][hapmap];0.90[ASN][1000 genomes]
rs34274306	0.90[ASN][1000 genomes]
rs35381615	0.87[ASN][1000 genomes]
rs4756828	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4757365	0.83[EUR][1000 genomes]
rs7102713	0.82[ASN][1000 genomes]
rs872928	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs900867	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs931280	0.81[JPT][hapmap];0.87[ASN][1000 genomes]
rs961776	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15797000-15805600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:15803800-15805400	Weak transcription	Fetal Lung	lung
3	chr11:15804400-15805800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:15804400-15806000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:15804400-15806400	Enhancers	NHEK	skin
6	chr11:15804600-15805600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr11:15804600-15805800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:15804600-15806000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr11:15804600-15806000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:15804600-15806200	Enhancers	Fetal Intestine Small	intestine
11	chr11:15804600-15806400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:15805000-15805600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr11:15805000-15805800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:15805000-15805800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr11:15805000-15805800	Enhancers	HMEC	breast
16	chr11:15805000-15806000	Enhancers	Gastric	stomach
17	chr11:15805200-15805400	Enhancers	Fetal Muscle Leg	muscle
18	chr11:15805200-15805600	Enhancers	Ovary	ovary
19	chr11:15805200-15805800	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr11:15805200-15805800	Enhancers	Fetal Intestine Large	intestine
21	chr11:15805200-15806800	Enhancers	Stomach Mucosa	stomach

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