Variant report

Variant	rs900867
Chromosome Location	chr11:15793358-15793359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1026949	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1026950	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832515	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023706	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023707	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023709	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12422116	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1484434	0.81[EUR][1000 genomes]
rs1484435	0.81[EUR][1000 genomes]
rs1601250	0.89[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1601251	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34274306	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35381615	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4462300	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4756828	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7102713	0.90[ASN][1000 genomes]
rs872928	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs931280	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs961776	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15790000-15794400	Weak transcription	Ovary	ovary
2	chr11:15790600-15795000	Weak transcription	Fetal Kidney	kidney
3	chr11:15791400-15793800	Weak transcription	Fetal Lung	lung
4	chr11:15791400-15796000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:15791400-15796800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:15791600-15795800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:15792400-15796600	Weak transcription	Lung	lung
8	chr11:15792600-15794400	Weak transcription	Fetal Muscle Leg	muscle
9	chr11:15792600-15796000	Weak transcription	Placenta	Placenta
10	chr11:15792600-15796000	Weak transcription	Stomach Mucosa	stomach
11	chr11:15792600-15796200	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:15792600-15805000	Weak transcription	Gastric	stomach
13	chr11:15792800-15794400	Weak transcription	Psoas Muscle	Psoas
14	chr11:15793200-15794400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr11:15793200-15796400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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