Variant report

Variant	rs4757365
Chromosome Location	chr11:15815555-15815556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11023707	0.85[CEU][hapmap]
rs11023721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12362658	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12422116	0.90[CEU][hapmap]
rs1484434	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1484435	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1601251	0.85[CEU][hapmap]
rs4462300	0.83[EUR][1000 genomes]
rs931280	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051187	chr11:15781277-15846536	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv2760185	chr11:15808636-15816484	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15813800-15828800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:15814000-15816400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr11:15814000-15816400	Enhancers	Osteobl	bone
4	chr11:15814000-15816600	Enhancers	NH-A	brain
5	chr11:15814200-15815800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr11:15814200-15815800	Enhancers	NHEK	skin
7	chr11:15814400-15815800	Enhancers	HMEC	breast
8	chr11:15814400-15816200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:15814600-15816000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr11:15814600-15816200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:15814600-15817400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr11:15814800-15816400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:15814800-15816400	Enhancers	HSMM	muscle
14	chr11:15815200-15815600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:15815200-15815800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr11:15815400-15816000	Enhancers	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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