Variant report

Variant	rs11023813
Chromosome Location	chr11:16007047-16007048
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16006435..16009165-chr11:16010685..16012252,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10734238	0.82[ASN][1000 genomes]
rs10741687	0.89[CHB][hapmap];0.83[CHD][hapmap];0.83[ASN][1000 genomes]
rs10832538	0.82[ASN][1000 genomes]
rs10832540	0.82[ASN][1000 genomes]
rs10832541	0.82[ASN][1000 genomes]
rs10832542	0.84[CHB][hapmap]
rs11023806	0.82[ASN][1000 genomes]
rs11023808	0.82[ASN][1000 genomes]
rs11023811	0.84[EUR][1000 genomes]
rs11023814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023815	0.89[CHB][hapmap];0.84[ASN][1000 genomes]
rs11023819	0.89[CHB][hapmap];0.83[ASN][1000 genomes]
rs12418884	0.81[ASN][1000 genomes]
rs35038372	0.82[ASN][1000 genomes]
rs35189093	0.82[ASN][1000 genomes]
rs36029390	0.82[ASN][1000 genomes]
rs4545520	0.92[CEU][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4756842	0.84[CHB][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
3	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
4	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
6	chr11:15998200-16011600	Weak transcription	Aorta	Aorta
7	chr11:15999200-16009800	Weak transcription	Psoas Muscle	Psoas
8	chr11:15999400-16022800	Weak transcription	K562	blood
9	chr11:15999600-16007400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr11:15999600-16009800	Weak transcription	Fetal Heart	heart
11	chr11:16001800-16010400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:16003000-16008600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:16004400-16010000	Weak transcription	Adipose Nuclei	Adipose
14	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:16006000-16009600	Weak transcription	Esophagus	oesophagus
16	chr11:16006400-16008000	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:16006600-16007800	Strong transcription	Liver	Liver
18	chr11:16006600-16008000	Strong transcription	Fetal Intestine Small	intestine
19	chr11:16006600-16008800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:16006600-16010800	Enhancers	Fetal Lung	lung
21	chr11:16006600-16010800	Enhancers	Fetal Stomach	stomach
22	chr11:16006800-16007800	Genic enhancers	Duodenum Mucosa	Duodenum
23	chr11:16006800-16007800	Genic enhancers	Fetal Muscle Leg	muscle
24	chr11:16006800-16007800	Strong transcription	Skeletal Muscle Female	skeletal muscle
25	chr11:16006800-16008200	Strong transcription	Fetal Intestine Large	intestine
26	chr11:16006800-16008400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:16007000-16007400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:16007000-16007600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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