Variant report

Variant	rs12418884
Chromosome Location	chr11:15998810-15998811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15998677..16000251-chr11:16002165..16003933,2	K562	blood:
2	chr11:15998751..16000447-chr11:16002065..16003665,2	K562	blood:
3	chr11:15989543..15991062-chr11:15998670..16001168,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10734238	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10741687	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741689	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766292	0.81[EUR][1000 genomes]
rs10766293	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10766294	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832538	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832539	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10832540	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832541	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832542	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10832543	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832544	0.81[EUR][1000 genomes]
rs10832545	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023807	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023809	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023810	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11023813	0.81[ASN][1000 genomes]
rs11023815	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023819	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023820	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023821	0.80[EUR][1000 genomes]
rs11023823	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023826	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11602209	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12276728	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12278364	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420343	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35038372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35189093	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35572903	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36029390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3922559	0.80[EUR][1000 genomes]
rs4335501	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4335502	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4342995	0.80[EUR][1000 genomes]
rs4437995	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4539287	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4627036	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4756841	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4756842	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4757378	0.82[EUR][1000 genomes]
rs4757379	0.81[EUR][1000 genomes]
rs4757380	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7111279	0.81[EUR][1000 genomes]
rs7947265	0.80[EUR][1000 genomes]
rs9645648	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15991600-16006600	Weak transcription	Liver	Liver
3	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:15992400-16006600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:15992600-16002400	Weak transcription	Stomach Mucosa	stomach
6	chr11:15992600-16006800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:15993000-15999000	Weak transcription	Right Atrium	heart
8	chr11:15993000-16006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
10	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
11	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
13	chr11:15993600-16006600	Weak transcription	Fetal Intestine Small	intestine
14	chr11:15994000-15999600	Strong transcription	Cortex derived primary cultured neurospheres	brain
15	chr11:15995000-16002600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr11:15995400-16006800	Weak transcription	Fetal Intestine Large	intestine
17	chr11:15997000-15999400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:15997200-15999000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:15997200-15999200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:15997400-15999400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:15997600-15999000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:15997600-15999400	Enhancers	K562	blood
23	chr11:15997800-16006600	Weak transcription	Fetal Lung	lung
24	chr11:15998200-15999600	Enhancers	Fetal Heart	heart
25	chr11:15998200-16011600	Weak transcription	Aorta	Aorta
26	chr11:15998800-15999200	Genic enhancers	Psoas Muscle	Psoas

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