Variant report

Variant	rs10766293
Chromosome Location	chr11:16015766-16015767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16013877..16016784-chr11:16017311..16019935,2	MCF-7	breast:

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10734238	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10741687	1.00[ASW][hapmap];0.96[CEU][hapmap];0.84[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10741689	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766291	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs10766292	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10766294	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766295	0.92[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs10766298	0.92[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs10766300	0.92[CEU][hapmap]
rs10832538	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832539	0.89[EUR][1000 genomes]
rs10832540	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832541	0.80[CEU][hapmap];0.93[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832542	0.81[CEU][hapmap];0.93[JPT][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10832543	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832544	0.92[EUR][1000 genomes]
rs10832545	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832551	0.88[CEU][hapmap]
rs10832553	0.92[CEU][hapmap]
rs10832554	0.92[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs11023806	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023807	0.88[EUR][1000 genomes]
rs11023808	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023809	0.88[EUR][1000 genomes]
rs11023810	0.89[EUR][1000 genomes]
rs11023815	0.92[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023819	0.96[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023820	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023821	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs11023823	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023833	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs11602209	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12276728	0.81[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs12278364	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12418884	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12420343	0.85[EUR][1000 genomes]
rs1455106	0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs34569224	0.86[EUR][1000 genomes]
rs35038372	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35189093	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35572903	0.88[EUR][1000 genomes]
rs36029390	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3922559	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4335501	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4335502	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4342995	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4437995	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4539287	0.92[GIH][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap]
rs4627036	0.88[EUR][1000 genomes]
rs4756841	0.97[GIH][hapmap];0.87[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs4756842	0.81[CEU][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4757378	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs4757379	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4757380	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7111279	0.92[EUR][1000 genomes]
rs7947265	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs9645647	0.88[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs9645648	0.92[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15999400-16022800	Weak transcription	K562	blood
2	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16010800-16021600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16011000-16019200	Weak transcription	Right Atrium	heart
9	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
10	chr11:16011200-16021400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:16013600-16020200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:16013800-16016000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16015600-16023600	Weak transcription	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links