Variant report

Variant	rs34569224
Chromosome Location	chr11:16031622-16031623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16022109..16024928-chr11:16030034..16031853,2	K562	blood:
2	chr11:16031461..16033992-chr11:16035845..16037535,2	K562	blood:
3	chr11:16031398..16034021-chr11:16626227..16628644,2	K562	blood:
4	chr11:16031461..16034142-chr11:16036035..16038140,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10741687	0.86[EUR][1000 genomes]
rs10741688	0.87[ASN][1000 genomes]
rs10741689	0.87[EUR][1000 genomes]
rs10766291	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10766292	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766293	0.86[EUR][1000 genomes]
rs10766294	0.86[EUR][1000 genomes]
rs10832543	0.86[EUR][1000 genomes]
rs10832544	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832545	0.86[EUR][1000 genomes]
rs11023815	0.84[EUR][1000 genomes]
rs11023819	0.86[EUR][1000 genomes]
rs11023820	0.86[EUR][1000 genomes]
rs11023821	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023823	0.87[EUR][1000 genomes]
rs11023826	0.88[EUR][1000 genomes]
rs11602209	0.87[EUR][1000 genomes]
rs12278364	0.87[EUR][1000 genomes]
rs3922559	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4335501	0.87[EUR][1000 genomes]
rs4335502	0.87[EUR][1000 genomes]
rs4342995	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4437995	0.87[EUR][1000 genomes]
rs4757378	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757379	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757380	0.82[EUR][1000 genomes]
rs7111279	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942880	0.96[ASN][1000 genomes]
rs7947265	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9645647	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9645648	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
2	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16023800-16033200	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:16023800-16033800	Weak transcription	Small Intestine	intestine
5	chr11:16023800-16035000	Weak transcription	Brain Substantia Nigra	brain
6	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:16024400-16033000	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16024400-16067200	Weak transcription	Liver	Liver
9	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:16025000-16031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr11:16025200-16033000	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr11:16025200-16034800	Weak transcription	Psoas Muscle	Psoas
13	chr11:16028000-16036800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:16028200-16033800	Weak transcription	Duodenum Mucosa	Duodenum
15	chr11:16029600-16032600	Weak transcription	K562	blood
16	chr11:16029600-16034800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:16029800-16033800	Weak transcription	Fetal Heart	heart
18	chr11:16030600-16033200	Weak transcription	Pancreas	Pancrea
19	chr11:16030600-16033800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:16030600-16034000	Weak transcription	Fetal Intestine Large	intestine
21	chr11:16031400-16032000	Enhancers	Fetal Kidney	kidney
22	chr11:16031400-16033800	Weak transcription	Fetal Lung	lung

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