Variant report

Variant	rs10741688
Chromosome Location	chr11:16012114-16012115
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16006435..16009165-chr11:16010685..16012252,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10766291	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10766292	1.00[CHB][hapmap];0.94[JPT][hapmap];0.96[ASN][1000 genomes]
rs10832544	0.91[ASN][1000 genomes]
rs10832555	0.84[CEU][hapmap]
rs11023811	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11023821	0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs11023859	0.92[CEU][hapmap]
rs11023860	0.87[CEU][hapmap]
rs1378305	0.88[CEU][hapmap]
rs1455104	0.91[CEU][hapmap]
rs1455109	0.88[CEU][hapmap]
rs1455111	0.87[CEU][hapmap]
rs2014828	0.91[CEU][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2124202	0.84[CEU][hapmap]
rs2953060	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34569224	0.87[ASN][1000 genomes]
rs3903292	0.87[CEU][hapmap]
rs3922559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4342995	0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4545520	0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4617548	0.87[CEU][hapmap]
rs4620684	0.91[CEU][hapmap]
rs4757378	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4757379	0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs7108091	0.87[CEU][hapmap]
rs7111279	0.91[ASN][1000 genomes]
rs7112473	0.86[CEU][hapmap]
rs7118395	0.87[CEU][hapmap]
rs7926424	0.88[CEU][hapmap]
rs7941496	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs7942880	0.89[CHB][hapmap];0.88[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7947265	0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs9645647	0.82[CHB][hapmap]
rs9651573	0.91[CEU][hapmap]
rs978294	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
2	chr11:15999400-16022800	Weak transcription	K562	blood
3	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16008800-16013800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16010600-16015000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr11:16010800-16012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr11:16010800-16015000	Weak transcription	Psoas Muscle	Psoas
10	chr11:16010800-16021600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
13	chr11:16011000-16015000	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:16011000-16019200	Weak transcription	Right Atrium	heart
15	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
16	chr11:16011200-16021400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr11:16011800-16013800	Enhancers	Stomach Mucosa	stomach
19	chr11:16012000-16013600	Enhancers	Pancreatic Islets	Pancreatic Islet

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