Variant report

Variant	rs7941496
Chromosome Location	chr11:16041305-16041306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16034951..16037801-chr11:16040174..16041965,2	K562	blood:
2	chr11:16032786..16036451-chr11:16039084..16041674,3	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10741688	0.83[CEU][hapmap];0.83[EUR][1000 genomes]
rs10832555	0.89[CEU][hapmap]
rs11023859	0.92[CEU][hapmap]
rs11023860	0.89[CEU][hapmap];0.95[TSI][hapmap]
rs1356647	0.89[CEU][hapmap];0.95[TSI][hapmap]
rs1378305	0.89[CEU][hapmap]
rs1455104	0.92[CEU][hapmap];0.98[TSI][hapmap]
rs1455109	0.89[CEU][hapmap]
rs1455111	0.89[CEU][hapmap];0.95[TSI][hapmap]
rs1455115	0.89[CEU][hapmap];0.98[TSI][hapmap]
rs1455117	0.89[CEU][hapmap]
rs1455118	0.92[CEU][hapmap]
rs1914875	0.88[CEU][hapmap]
rs1949482	0.89[CEU][hapmap]
rs1949483	0.89[CEU][hapmap]
rs2014828	0.92[CEU][hapmap];0.98[TSI][hapmap];0.84[EUR][1000 genomes]
rs2124202	0.89[CEU][hapmap]
rs2168253	0.92[CEU][hapmap]
rs2953060	0.86[EUR][1000 genomes]
rs3903292	0.89[CEU][hapmap];0.98[TSI][hapmap]
rs4545520	0.81[CEU][hapmap];0.84[TSI][hapmap]
rs4617548	0.89[CEU][hapmap];0.98[TSI][hapmap];0.80[EUR][1000 genomes]
rs4620684	0.92[CEU][hapmap];0.98[TSI][hapmap]
rs6486278	0.89[CEU][hapmap]
rs7108091	0.89[CEU][hapmap];0.95[TSI][hapmap]
rs7112473	0.87[CEU][hapmap]
rs7118395	0.89[CEU][hapmap];0.95[TSI][hapmap]
rs7125634	0.92[CEU][hapmap];0.98[TSI][hapmap]
rs7926424	0.89[CEU][hapmap]
rs7931734	0.89[CEU][hapmap]
rs7950736	0.89[CEU][hapmap]
rs9651573	0.92[CEU][hapmap];0.98[TSI][hapmap]
rs978294	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7941496	DKFZp686O24166	cis	cerebellum	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:16024400-16067200	Weak transcription	Liver	Liver
3	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
5	chr11:16034800-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:16035000-16057400	Weak transcription	Fetal Intestine Small	intestine
7	chr11:16036000-16041600	Weak transcription	Left Ventricle	heart
8	chr11:16036000-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:16036000-16073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr11:16037400-16041600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:16037600-16041600	Weak transcription	Brain Anterior Caudate	brain
12	chr11:16037600-16081200	Weak transcription	Psoas Muscle	Psoas
13	chr11:16037800-16047600	Weak transcription	Fetal Intestine Large	intestine
14	chr11:16038200-16059200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr11:16038200-16065000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:16038200-16067200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:16038600-16042000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:16038800-16043200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:16039000-16059000	Weak transcription	Aorta	Aorta
20	chr11:16039600-16041600	Weak transcription	Ovary	ovary
21	chr11:16039800-16053000	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr11:16040000-16047400	Weak transcription	Brain Germinal Matrix	brain
23	chr11:16040400-16042200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:16041000-16041400	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links