Variant report
Variant | rs2168253 |
---|---|
Chromosome Location | chr11:16228791-16228792 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr11:16226649..16230230-chr11:16231608..16235450,4 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10832552 | 0.86[ASN][1000 genomes] |
rs10832555 | 0.93[CEU][hapmap];0.90[EUR][1000 genomes] |
rs10832556 | 0.92[EUR][1000 genomes] |
rs10832557 | 0.92[EUR][1000 genomes] |
rs11023859 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11023860 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs1349984 | 0.91[EUR][1000 genomes] |
rs1349985 | 0.91[EUR][1000 genomes] |
rs1349986 | 0.88[EUR][1000 genomes] |
rs1356647 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
rs1378305 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs1455103 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1455104 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
rs1455109 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
rs1455111 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
rs1455113 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs1455114 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs1455115 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
rs1455117 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
rs1455118 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs1914875 | 0.92[CEU][hapmap];0.92[EUR][1000 genomes] |
rs1949482 | 0.93[CEU][hapmap];0.92[EUR][1000 genomes] |
rs1949483 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
rs2014828 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs2054095 | 0.92[EUR][1000 genomes] |
rs2124202 | 0.93[CEU][hapmap];0.88[EUR][1000 genomes] |
rs3903292 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
rs4617548 | 0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap] |
rs4620684 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6486276 | 0.91[EUR][1000 genomes] |
rs6486277 | 0.92[EUR][1000 genomes] |
rs6486278 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
rs6486279 | 0.92[EUR][1000 genomes] |
rs7102224 | 0.92[EUR][1000 genomes] |
rs7108091 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
rs7112473 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |
rs7114017 | 0.92[EUR][1000 genomes] |
rs7118395 | 0.96[CEU][hapmap];0.88[EUR][1000 genomes] |
rs7125634 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7131157 | 0.87[EUR][1000 genomes] |
rs7926424 | 0.96[CEU][hapmap];0.90[EUR][1000 genomes] |
rs7931734 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
rs7941496 | 0.92[CEU][hapmap] |
rs7950736 | 0.96[CEU][hapmap];0.92[EUR][1000 genomes] |
rs9651573 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs978294 | 0.96[CEU][hapmap];0.91[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529731 | chr11:16122782-16468170 | Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
2 | nsv897012 | chr11:16189326-16283644 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv553563 | chr11:16206658-16259405 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | nsv897013 | chr11:16206658-16307700 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv897014 | chr11:16211343-16283644 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
6 | nsv467710 | chr11:16219341-16266740 | Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv553564 | chr11:16219341-16266740 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv553565 | chr11:16220289-16307700 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
9 | nsv435922 | chr11:16227682-16234455 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr11:16224400-16247200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
2 | chr11:16226000-16238400 | Weak transcription | Psoas Muscle | Psoas |