Variant report

Variant	rs1455103
Chromosome Location	chr11:16180008-16180009
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16178415..16182237-chr11:16182900..16185853,4	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10832552	0.94[ASN][1000 genomes]
rs10832555	0.90[EUR][1000 genomes]
rs10832556	0.88[EUR][1000 genomes]
rs10832557	0.88[EUR][1000 genomes]
rs11023859	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023860	0.92[EUR][1000 genomes]
rs1349984	0.89[EUR][1000 genomes]
rs1349985	0.89[EUR][1000 genomes]
rs1349986	0.92[EUR][1000 genomes]
rs1356647	0.87[EUR][1000 genomes]
rs1378305	0.92[EUR][1000 genomes]
rs1455104	0.90[EUR][1000 genomes]
rs1455109	0.89[EUR][1000 genomes]
rs1455111	0.89[EUR][1000 genomes]
rs1455113	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1455114	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1455115	0.88[EUR][1000 genomes]
rs1455117	0.88[EUR][1000 genomes]
rs1455118	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1914875	0.88[EUR][1000 genomes]
rs1949482	0.88[EUR][1000 genomes]
rs1949483	0.88[EUR][1000 genomes]
rs2014828	0.80[AFR][1000 genomes]
rs2054095	0.88[EUR][1000 genomes]
rs2124202	0.92[EUR][1000 genomes]
rs2168253	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3903292	0.89[EUR][1000 genomes]
rs4617548	0.83[AFR][1000 genomes]
rs4620684	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6486276	0.89[EUR][1000 genomes]
rs6486277	0.88[EUR][1000 genomes]
rs6486278	0.88[EUR][1000 genomes]
rs6486279	0.88[EUR][1000 genomes]
rs7102224	0.88[EUR][1000 genomes]
rs7108091	0.90[EUR][1000 genomes]
rs7112473	0.89[EUR][1000 genomes]
rs7114017	0.88[EUR][1000 genomes]
rs7118395	0.92[EUR][1000 genomes]
rs7125634	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7131157	0.83[EUR][1000 genomes]
rs7926424	0.88[EUR][1000 genomes]
rs7931734	0.88[EUR][1000 genomes]
rs7950736	0.88[EUR][1000 genomes]
rs9651573	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs978294	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16174200-16191200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16175000-16180800	Enhancers	NHEK	skin
5	chr11:16175200-16180600	Enhancers	HMEC	breast
6	chr11:16177600-16181000	Enhancers	A549	lung
7	chr11:16177600-16187800	Weak transcription	Fetal Intestine Small	intestine
8	chr11:16178000-16185200	Weak transcription	Fetal Intestine Large	intestine
9	chr11:16178800-16180800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr11:16179800-16180600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:16179800-16181800	Weak transcription	Psoas Muscle	Psoas
12	chr11:16180000-16180600	Enhancers	Hela-S3	cervix

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