Variant report

Variant	rs11023821
Chromosome Location	chr11:16022866-16022867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16021826..16024394-chr11:16625714..16628105,2	K562	blood:
2	chr11:16017320..16020283-chr11:16020429..16023052,2	K562	blood:
3	chr11:15987618..15990384-chr11:16022034..16024122,2	K562	blood:
4	chr11:16022109..16024928-chr11:16030034..16031853,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10500821	0.88[LWK][hapmap];0.80[MKK][hapmap];0.85[YRI][hapmap]
rs10734238	0.81[EUR][1000 genomes]
rs10741687	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10741688	0.89[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs10741689	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10766291	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766292	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766293	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10766294	0.96[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs10766295	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766298	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766300	0.92[CEU][hapmap]
rs10766301	0.91[CEU][hapmap]
rs10832538	0.83[EUR][1000 genomes]
rs10832539	0.82[EUR][1000 genomes]
rs10832540	0.82[EUR][1000 genomes]
rs10832541	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs10832542	0.81[CEU][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs10832543	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs10832544	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832545	0.92[EUR][1000 genomes]
rs10832551	0.88[CEU][hapmap]
rs10832553	0.92[CEU][hapmap]
rs10832554	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs11023806	0.81[EUR][1000 genomes]
rs11023807	0.81[EUR][1000 genomes]
rs11023808	0.81[EUR][1000 genomes]
rs11023809	0.81[EUR][1000 genomes]
rs11023810	0.82[EUR][1000 genomes]
rs11023815	0.92[CEU][hapmap];0.89[EUR][1000 genomes]
rs11023819	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11023820	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.92[EUR][1000 genomes]
rs11023823	0.92[EUR][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11023833	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs11602209	0.92[EUR][1000 genomes]
rs12276728	0.81[CEU][hapmap]
rs12278364	0.92[EUR][1000 genomes]
rs12418884	0.80[EUR][1000 genomes]
rs1455106	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs16932414	0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs16932450	0.93[YRI][hapmap]
rs16932453	0.92[YRI][hapmap]
rs16932458	0.93[LWK][hapmap];0.93[YRI][hapmap]
rs34569224	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35038372	0.81[EUR][1000 genomes]
rs35189093	0.82[EUR][1000 genomes]
rs35572903	0.81[EUR][1000 genomes]
rs36029390	0.81[EUR][1000 genomes]
rs3922559	1.00[ASW][hapmap];0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.86[LWK][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4335501	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4335502	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4342995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437995	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.92[EUR][1000 genomes]
rs4539287	0.86[TSI][hapmap]
rs4545520	0.85[JPT][hapmap]
rs4627036	0.81[EUR][1000 genomes]
rs4756841	0.84[GIH][hapmap];0.93[TSI][hapmap]
rs4756842	0.81[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap];0.80[EUR][1000 genomes]
rs4757378	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757379	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757380	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs7111279	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7942880	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7947265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9645647	0.96[CEU][hapmap];0.85[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9645648	0.92[CEU][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
4	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr11:16015600-16023600	Weak transcription	Fetal Muscle Leg	muscle
6	chr11:16020400-16023200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:16020600-16023000	Enhancers	Fetal Lung	lung
8	chr11:16020600-16023400	Enhancers	Osteobl	bone
9	chr11:16020800-16023200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:16021000-16023400	Enhancers	HMEC	breast
11	chr11:16021200-16023000	Enhancers	Muscle Satellite Cultured Cells	--
12	chr11:16021200-16023600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:16021200-16024000	Enhancers	NHEK	skin
14	chr11:16021200-16025400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr11:16021400-16023200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:16021400-16024200	Enhancers	NH-A	brain
17	chr11:16021600-16023000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:16021600-16023000	Enhancers	NHDF-Ad	bronchial
19	chr11:16021600-16023000	Enhancers	NHLF	lung
20	chr11:16021600-16023200	Enhancers	HUVEC	blood vessel
21	chr11:16021800-16023000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:16021800-16023000	Weak transcription	Fetal Kidney	kidney
23	chr11:16022000-16023000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:16022200-16023200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr11:16022200-16023800	Enhancers	Small Intestine	intestine
26	chr11:16022400-16023800	Enhancers	Sigmoid Colon	Sigmoid Colon
27	chr11:16022600-16023400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:16022600-16023800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr11:16022600-16024800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:16022800-16023000	Flanking Active TSS	A549	lung
31	chr11:16022800-16023000	Enhancers	Hela-S3	cervix
32	chr11:16022800-16023000	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr11:16022800-16023400	Enhancers	Primary hematopoietic stem cells short term culture	blood
34	chr11:16022800-16023400	Enhancers	Stomach Mucosa	stomach
35	chr11:16022800-16023600	Enhancers	HSMMtube	muscle
36	chr11:16022800-16023800	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr11:16022800-16023800	Enhancers	K562	blood
38	chr11:16022800-16024400	Enhancers	Primary neutrophils fromperipheralblood	blood
39	chr11:16022800-16024400	Enhancers	Fetal Intestine Large	intestine
40	chr11:16022800-16024400	Enhancers	Fetal Intestine Small	intestine
41	chr11:16022800-16024800	Enhancers	HepG2	liver
42	chr11:16022800-16025000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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