Variant report

Variant	rs12276728
Chromosome Location	chr11:15996866-15996867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15993560..15998365-chr11:15999415..16005158,8	K562	blood:
2	chr11:15989159..15992017-chr11:15995750..15998215,2	K562	blood:
3	chr11:15993161..15994874-chr11:15996366..15998234,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10734238	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10741687	0.85[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs10741689	0.86[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs10766291	0.81[CEU][hapmap]
rs10766292	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs10766293	0.81[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs10766294	0.85[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs10766295	0.81[CEU][hapmap]
rs10766298	0.81[CEU][hapmap]
rs10766300	0.82[CEU][hapmap]
rs10832538	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832539	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832540	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832541	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10832542	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832543	0.82[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs10832544	0.80[EUR][1000 genomes]
rs10832545	0.87[EUR][1000 genomes]
rs10832553	0.82[CEU][hapmap]
rs10832554	0.81[CEU][hapmap]
rs11023806	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023807	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023808	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11023809	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023810	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023815	0.85[CEU][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11023819	0.86[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs11023820	0.88[CEU][hapmap];0.93[JPT][hapmap];0.87[EUR][1000 genomes]
rs11023821	0.81[CEU][hapmap]
rs11023823	0.86[EUR][1000 genomes]
rs11023826	0.86[CEU][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs11023833	0.82[CEU][hapmap]
rs11602209	0.86[EUR][1000 genomes]
rs12278364	0.86[EUR][1000 genomes]
rs12418884	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12420343	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1455106	0.81[CEU][hapmap]
rs35038372	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35189093	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35572903	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36029390	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3922559	0.85[CEU][hapmap]
rs4237711	0.82[JPT][hapmap]
rs4335501	0.86[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs4335502	0.86[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs4342995	0.81[CEU][hapmap]
rs4437995	0.85[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs4539287	0.92[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes]
rs4627036	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4756841	0.96[CEU][hapmap];0.93[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4756842	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757378	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs4757379	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs4757380	0.93[JPT][hapmap]
rs7111279	0.80[EUR][1000 genomes]
rs7947265	0.82[CEU][hapmap]
rs9645648	0.81[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15991600-16006600	Weak transcription	Liver	Liver
3	chr11:15991800-15997200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:15991800-15997400	Weak transcription	HepG2	liver
5	chr11:15991800-15998000	Weak transcription	Aorta	Aorta
6	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:15992000-15997200	Weak transcription	NHLF	lung
8	chr11:15992000-15997400	Weak transcription	Fetal Lung	lung
9	chr11:15992000-15997400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:15992400-16006600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr11:15992600-15997600	Weak transcription	Fetal Heart	heart
12	chr11:15992600-15998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:15992600-16002400	Weak transcription	Stomach Mucosa	stomach
14	chr11:15992600-16006800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:15992800-15997000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:15992800-15997400	Weak transcription	Osteobl	bone
17	chr11:15992800-15998000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:15992800-15998000	Weak transcription	NHEK	skin
19	chr11:15993000-15997200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:15993000-15997400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:15993000-15999000	Weak transcription	Right Atrium	heart
22	chr11:15993000-16006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
24	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
25	chr11:15993200-15997400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr11:15993200-15997600	Weak transcription	K562	blood
27	chr11:15993200-15997800	Weak transcription	Psoas Muscle	Psoas
28	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
30	chr11:15993600-15997600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:15993600-16006600	Weak transcription	Fetal Intestine Small	intestine
32	chr11:15994000-15999600	Strong transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:15995000-16002600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:15995400-15997200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:15995400-16006800	Weak transcription	Fetal Intestine Large	intestine

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