Variant report

Variant	rs10741689
Chromosome Location	chr11:16026749-16026750
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16020621..16022625-chr11:16024207..16026994,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10734238	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10741687	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766291	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10766292	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10766293	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766295	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10766298	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766300	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766301	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10832538	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832539	0.89[EUR][1000 genomes]
rs10832540	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832541	0.85[CEU][hapmap];0.93[JPT][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832542	0.85[CEU][hapmap];0.93[JPT][hapmap];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832543	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832544	0.92[EUR][1000 genomes]
rs10832545	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832551	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs10832553	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10832554	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs11023806	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023807	0.88[EUR][1000 genomes]
rs11023808	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11023809	0.88[EUR][1000 genomes]
rs11023810	0.89[EUR][1000 genomes]
rs11023814	0.80[ASN][1000 genomes]
rs11023815	0.93[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11023819	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11023820	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11023821	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11023823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023833	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs11602209	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12276728	0.86[CEU][hapmap];0.93[JPT][hapmap];0.86[EUR][1000 genomes]
rs12278364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12418884	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420343	0.85[EUR][1000 genomes]
rs1455106	0.96[CEU][hapmap]
rs34569224	0.87[EUR][1000 genomes]
rs35038372	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35189093	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35572903	0.87[EUR][1000 genomes]
rs36029390	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3922559	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4335501	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4335502	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4342995	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4437995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4539287	0.81[JPT][hapmap];1.00[YRI][hapmap];0.80[ASN][1000 genomes]
rs4627036	0.88[EUR][1000 genomes]
rs4756841	0.81[CEU][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs4756842	0.85[CEU][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757378	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs4757379	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4757380	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7111279	0.92[EUR][1000 genomes]
rs7947265	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs9645647	0.92[CEU][hapmap];0.85[EUR][1000 genomes]
rs9645648	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
2	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:16023800-16027600	Weak transcription	K562	blood
4	chr11:16023800-16027800	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:16023800-16029200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:16023800-16033200	Weak transcription	Fetal Muscle Leg	muscle
7	chr11:16023800-16033800	Weak transcription	Small Intestine	intestine
8	chr11:16023800-16035000	Weak transcription	Brain Substantia Nigra	brain
9	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:16024200-16029600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:16024400-16028000	Weak transcription	Fetal Intestine Large	intestine
12	chr11:16024400-16033000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:16024400-16067200	Weak transcription	Liver	Liver
14	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:16025000-16027600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:16025000-16028000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:16025000-16031800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr11:16025200-16027400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:16025200-16028000	Weak transcription	Fetal Heart	heart
20	chr11:16025200-16033000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr11:16025200-16034800	Weak transcription	Psoas Muscle	Psoas

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