Variant report

Variant	rs10832553
Chromosome Location	chr11:16176598-16176599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16174141..16177585-chr11:16182618..16186362,3	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10741687	0.96[CEU][hapmap]
rs10741689	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766291	0.92[CEU][hapmap]
rs10766292	0.92[CEU][hapmap]
rs10766293	0.92[CEU][hapmap]
rs10766294	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10766298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10766300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10766301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832541	0.81[CEU][hapmap]
rs10832542	0.81[CEU][hapmap]
rs10832543	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10832551	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10832554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023815	0.89[CEU][hapmap]
rs11023819	0.96[CEU][hapmap]
rs11023820	0.96[CEU][hapmap]
rs11023821	0.92[CEU][hapmap]
rs11023826	0.96[CEU][hapmap]
rs11023833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11023860	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023879	1.00[YRI][hapmap]
rs12276728	0.82[CEU][hapmap]
rs1356647	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1378305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455104	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes]
rs1455109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455111	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455115	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3903292	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3922559	0.96[CEU][hapmap]
rs4335501	0.96[CEU][hapmap]
rs4335502	0.96[CEU][hapmap]
rs4342995	0.92[CEU][hapmap]
rs4437995	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs4539287	0.82[CEU][hapmap];1.00[YRI][hapmap]
rs4756841	1.00[YRI][hapmap]
rs4756842	0.81[CEU][hapmap];1.00[YRI][hapmap]
rs4757378	0.93[CEU][hapmap]
rs4757379	0.92[CEU][hapmap]
rs4757380	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7108091	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7118395	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947265	0.93[CEU][hapmap]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9645647	0.96[CEU][hapmap]
rs9645648	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap]
rs978294	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16172400-16191400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16172600-16191400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16174200-16191200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:16174600-16176800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:16174800-16178400	Enhancers	Stomach Mucosa	stomach
6	chr11:16174800-16180000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:16175000-16177000	Enhancers	Hela-S3	cervix
8	chr11:16175000-16178400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:16175000-16180800	Enhancers	NHEK	skin
10	chr11:16175200-16177400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:16175200-16177800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:16175200-16180600	Enhancers	HMEC	breast
13	chr11:16175400-16179000	Enhancers	Pancreatic Islets	Pancreatic Islet
14	chr11:16175600-16177600	Flanking Active TSS	A549	lung
15	chr11:16175800-16177200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:16176000-16177600	Enhancers	Fetal Intestine Small	intestine
17	chr11:16176200-16176600	Enhancers	HSMM	muscle
18	chr11:16176200-16176800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr11:16176200-16178000	Enhancers	Fetal Intestine Large	intestine
20	chr11:16176200-16178400	Enhancers	HepG2	liver

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