Variant report

Variant	rs10832554
Chromosome Location	chr11:16192283-16192284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16191988..16194982-chr11:16195738..16200331,5	K562	blood:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10741687	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs10741689	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766291	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766292	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766293	0.92[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs10766294	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs10766295	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10766296	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10766298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10766300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832541	0.80[CEU][hapmap]
rs10832542	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs10832543	1.00[ASW][hapmap];0.92[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs10832551	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832552	0.91[EUR][1000 genomes]
rs10832553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10832556	0.92[ASN][1000 genomes]
rs10832557	0.88[ASN][1000 genomes]
rs11023815	0.92[CEU][hapmap]
rs11023819	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs11023820	0.96[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs11023821	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs11023826	0.96[CEU][hapmap]
rs11023833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11023860	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11023879	1.00[YRI][hapmap]
rs12276728	0.81[CEU][hapmap]
rs1349984	1.00[ASN][1000 genomes]
rs1349985	1.00[ASN][1000 genomes]
rs1349986	1.00[ASN][1000 genomes]
rs1356647	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1378305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1455104	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1455106	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1455109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1455111	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1455115	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1949482	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1949483	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2054095	0.93[ASN][1000 genomes]
rs2124202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3903292	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3922559	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs4335501	0.96[CEU][hapmap]
rs4335502	0.96[CEU][hapmap]
rs4342995	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs4437995	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs4539287	0.82[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs4756841	0.86[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs4756842	0.81[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs4757378	0.92[CEU][hapmap]
rs4757379	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs4757380	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs6486276	1.00[ASN][1000 genomes]
rs6486277	0.93[ASN][1000 genomes]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6486279	0.93[ASN][1000 genomes]
rs7102224	0.94[ASN][1000 genomes]
rs7108091	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7112473	0.93[ASN][1000 genomes]
rs7114017	0.94[ASN][1000 genomes]
rs7118395	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7131157	0.92[ASN][1000 genomes]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7947265	0.92[CEU][hapmap]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9645647	0.96[CEU][hapmap];0.95[TSI][hapmap]
rs9645648	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap]
rs978294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16185800-16205600	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16189400-16199200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:16190000-16196400	Weak transcription	Fetal Heart	heart
4	chr11:16190400-16192400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:16190800-16194200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr11:16190800-16194200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:16190800-16194400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr11:16190800-16194600	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr11:16191000-16192800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr11:16191000-16193000	Enhancers	Fetal Lung	lung
11	chr11:16191000-16193000	Enhancers	A549	lung
12	chr11:16191000-16194200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:16191000-16194800	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:16191200-16192800	Enhancers	Brain Germinal Matrix	brain
15	chr11:16191200-16194200	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr11:16191400-16193000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:16191400-16194000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr11:16191400-16194800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr11:16191600-16192400	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:16191600-16192400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:16191600-16192800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr11:16191600-16192800	Enhancers	Fetal Brain Female	brain
23	chr11:16191800-16192600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:16191800-16199600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:16192000-16192800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:16192000-16194800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:16192200-16192800	Enhancers	Fetal Kidney	kidney
28	chr11:16192200-16193600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links