Variant report

Variant	rs1455106
Chromosome Location	chr11:16151411-16151412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16149823..16152232-chr11:16154074..16156532,2	K562	blood:
2	chr11:16147074..16149569-chr11:16151247..16152894,2	K562	blood:

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10741687	0.96[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs10741689	0.96[CEU][hapmap]
rs10766291	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766292	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766293	0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs10766294	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap]
rs10766295	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10766296	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10766298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10766300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs10766301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10832541	0.80[CEU][hapmap]
rs10832542	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs10832543	1.00[ASW][hapmap];0.92[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap]
rs10832551	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10832553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes]
rs10832554	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023815	0.92[CEU][hapmap]
rs11023819	0.96[CEU][hapmap]
rs11023820	0.96[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap]
rs11023821	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs11023826	0.96[CEU][hapmap]
rs11023833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11023860	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs12276728	0.81[CEU][hapmap]
rs1356647	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1378305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455104	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1455109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455111	1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs1455115	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3903292	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs3922559	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs4335501	0.96[CEU][hapmap]
rs4335502	0.96[CEU][hapmap]
rs4342995	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs4437995	1.00[ASW][hapmap];0.96[CEU][hapmap];0.88[GIH][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap]
rs4539287	0.82[CEU][hapmap];0.91[GIH][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap]
rs4756841	0.85[GIH][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap]
rs4756842	0.81[CEU][hapmap];0.88[GIH][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap]
rs4757378	0.92[CEU][hapmap]
rs4757379	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs4757380	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7108091	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7118395	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947265	0.92[CEU][hapmap]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9645647	0.96[CEU][hapmap];0.95[TSI][hapmap]
rs9645648	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs978294	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16148400-16155600	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr11:16148400-16160200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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