Variant report

Variant	rs4757380
Chromosome Location	chr11:16035345-16035346
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:16033382..16036196-chr11:16045412..16048891,3	K562	blood:
2	chr11:16034162..16035790-chr11:16047391..16049636,2	K562	blood:
3	chr11:16032786..16036451-chr11:16039084..16041674,3	K562	blood:

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10734238	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10741687	0.92[CEU][hapmap];0.89[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10741689	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10766291	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs10766292	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs10766293	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10766294	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10766295	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs10766298	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs10766300	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766301	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10832538	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832539	0.82[EUR][1000 genomes]
rs10832540	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832541	0.93[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10832542	0.93[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs10832543	1.00[ASW][hapmap];0.89[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10832544	0.84[EUR][1000 genomes]
rs10832545	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10832551	0.92[CEU][hapmap];1.00[YRI][hapmap]
rs10832553	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10832554	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap]
rs11023806	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023807	0.81[EUR][1000 genomes]
rs11023808	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11023809	0.81[EUR][1000 genomes]
rs11023810	0.82[EUR][1000 genomes]
rs11023815	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11023819	0.92[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023820	0.92[CEU][hapmap];0.94[CHB][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11023821	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs11023823	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11023826	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023833	0.96[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11023860	0.81[GIH][hapmap]
rs11602209	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12276728	0.93[JPT][hapmap]
rs12278364	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12418884	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1356647	0.81[GIH][hapmap]
rs1455104	0.81[GIH][hapmap]
rs1455106	1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[GIH][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes]
rs1455115	0.81[GIH][hapmap]
rs34569224	0.82[EUR][1000 genomes]
rs35038372	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35189093	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35572903	0.81[EUR][1000 genomes]
rs36029390	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3903292	0.81[GIH][hapmap]
rs3922559	0.92[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes]
rs4335501	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335502	0.92[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4342995	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs4437995	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4539287	0.85[CEU][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs4627036	0.81[EUR][1000 genomes]
rs4756841	0.89[GIH][hapmap];0.87[JPT][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs4756842	0.94[CHD][hapmap];0.92[GIH][hapmap];0.93[JPT][hapmap];1.00[LWK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4757378	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4757379	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.84[EUR][1000 genomes]
rs7108091	0.81[GIH][hapmap]
rs7111279	0.84[EUR][1000 genomes]
rs7118395	0.81[GIH][hapmap]
rs7947265	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs9645647	0.92[CEU][hapmap];0.81[GIH][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes]
rs9645648	0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1045933	chr11:16023805-16067955	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16023400-16035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:16023800-16050400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:16024400-16067200	Weak transcription	Liver	Liver
4	chr11:16024800-16088200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:16028000-16036800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr11:16032400-16036000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16033000-16038200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr11:16033200-16038200	Enhancers	Fetal Muscle Leg	muscle
9	chr11:16033400-16036000	Enhancers	Fetal Kidney	kidney
10	chr11:16033800-16036000	Enhancers	Fetal Heart	heart
11	chr11:16033800-16036000	Enhancers	Left Ventricle	heart
12	chr11:16033800-16036000	Enhancers	Right Atrium	heart
13	chr11:16034000-16035600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:16034000-16036000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr11:16034000-16037800	Strong transcription	Fetal Intestine Large	intestine
16	chr11:16034200-16035400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr11:16034200-16035400	Weak transcription	HSMMtube	muscle
18	chr11:16034200-16035400	Weak transcription	NHLF	lung
19	chr11:16034200-16038000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:16034200-16040600	Weak transcription	Duodenum Mucosa	Duodenum
21	chr11:16034200-16079200	Weak transcription	Pancreas	Pancrea
22	chr11:16034400-16035600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr11:16034600-16035600	Enhancers	Fetal Lung	lung
24	chr11:16034800-16036000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:16034800-16036200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:16034800-16037600	Enhancers	Psoas Muscle	Psoas
27	chr11:16034800-16042800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:16035000-16036000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:16035000-16057400	Weak transcription	Fetal Intestine Small	intestine

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