Variant report

Variant	rs10766291
Chromosome Location	chr11:16011729-16011730
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16006435..16009165-chr11:16010685..16012252,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10741687	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs10741688	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10741689	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs10766292	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10766293	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs10766294	0.96[CEU][hapmap];0.87[GIH][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs10766295	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766298	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766300	0.92[CEU][hapmap]
rs10832538	0.81[EUR][1000 genomes]
rs10832541	0.80[CEU][hapmap]
rs10832542	0.81[CEU][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs10832543	0.92[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.89[EUR][1000 genomes]
rs10832544	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10832545	0.89[EUR][1000 genomes]
rs10832551	0.88[CEU][hapmap]
rs10832553	0.92[CEU][hapmap]
rs10832554	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs11023811	0.83[ASN][1000 genomes]
rs11023815	0.92[CEU][hapmap];0.87[EUR][1000 genomes]
rs11023819	0.96[CEU][hapmap];0.89[EUR][1000 genomes]
rs11023820	0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.89[EUR][1000 genomes]
rs11023821	0.93[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11023823	0.88[EUR][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs11023833	0.92[CEU][hapmap]
rs11602209	0.88[EUR][1000 genomes]
rs12276728	0.81[CEU][hapmap]
rs12278364	0.88[EUR][1000 genomes]
rs1455106	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs34569224	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3922559	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4335501	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4335502	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs4342995	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4437995	0.96[CEU][hapmap];0.87[GIH][hapmap];0.97[TSI][hapmap];0.88[EUR][1000 genomes]
rs4539287	0.86[TSI][hapmap]
rs4545520	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4756841	0.84[GIH][hapmap];0.93[TSI][hapmap]
rs4756842	0.81[CEU][hapmap];0.87[GIH][hapmap];0.93[TSI][hapmap]
rs4757378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4757379	1.00[ASW][hapmap];1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4757380	0.88[CEU][hapmap];0.84[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs7111279	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7942880	0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7947265	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9645647	0.96[CEU][hapmap];0.83[CHB][hapmap];0.86[GIH][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9645648	0.92[CEU][hapmap];0.93[TSI][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3445269	chr11:16011562-16012077	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
2	chr11:15999400-16022800	Weak transcription	K562	blood
3	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
6	chr11:16008800-16013800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:16010200-16012000	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr11:16010600-16015000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:16010800-16012800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:16010800-16015000	Weak transcription	Psoas Muscle	Psoas
11	chr11:16010800-16021600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
14	chr11:16011000-16015000	Weak transcription	Fetal Muscle Leg	muscle
15	chr11:16011000-16019200	Weak transcription	Right Atrium	heart
16	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
17	chr11:16011200-16011800	Enhancers	Fetal Lung	lung
18	chr11:16011200-16021400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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