Variant report

Variant	rs10766295
Chromosome Location	chr11:16105390-16105391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16105376..16109497-chr11:16109885..16113446,3	MCF-7	breast:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10741687	0.96[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs10741689	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10766291	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766292	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs10766293	0.92[CEU][hapmap];0.89[GIH][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs10766294	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10766296	0.81[EUR][1000 genomes]
rs10766298	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10766300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10766301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10832541	0.80[CEU][hapmap]
rs10832542	0.81[CEU][hapmap];0.86[TSI][hapmap]
rs10832543	1.00[ASW][hapmap];0.92[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs10832545	0.86[EUR][1000 genomes]
rs10832551	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10832553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10832554	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11023815	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs11023819	0.96[CEU][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs11023820	0.96[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];0.90[TSI][hapmap];0.86[EUR][1000 genomes]
rs11023821	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs11023823	0.86[EUR][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs11023833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11023860	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs11023879	1.00[YRI][hapmap]
rs11602209	0.86[EUR][1000 genomes]
rs12276728	0.81[CEU][hapmap]
rs12278364	0.86[EUR][1000 genomes]
rs1356647	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1378305	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455104	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1455106	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1455109	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1455111	1.00[CHB][hapmap];0.93[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs1455115	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949482	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1949483	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2124202	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3903292	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs3922559	0.96[CEU][hapmap];0.90[TSI][hapmap]
rs4335501	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs4335502	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs4342995	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs4437995	1.00[ASW][hapmap];0.96[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes]
rs4539287	0.82[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs4756841	0.86[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs4756842	0.81[CEU][hapmap];0.89[GIH][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];0.88[TSI][hapmap];1.00[YRI][hapmap]
rs4757378	0.92[CEU][hapmap]
rs4757379	0.92[CEU][hapmap];0.90[TSI][hapmap]
rs4757380	1.00[ASW][hapmap];0.96[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.91[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.91[EUR][1000 genomes]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7108091	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7118395	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7947265	0.92[CEU][hapmap]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9645647	0.96[CEU][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes]
rs9645648	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.91[MEX][hapmap];0.98[TSI][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs978294	1.00[CHB][hapmap];1.00[JPT][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16083200-16116000	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16089400-16117400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:16097000-16115600	Weak transcription	Psoas Muscle	Psoas
4	chr11:16098600-16137000	Weak transcription	Pancreas	Pancrea
5	chr11:16100400-16107800	Weak transcription	Esophagus	oesophagus
6	chr11:16101800-16109600	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:16102800-16107800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:16103800-16108000	Weak transcription	Aorta	Aorta
9	chr11:16103800-16110600	Weak transcription	Fetal Intestine Small	intestine
10	chr11:16104200-16107400	Weak transcription	Brain Anterior Caudate	brain
11	chr11:16104200-16107400	Weak transcription	Fetal Kidney	kidney
12	chr11:16104400-16106600	Weak transcription	Fetal Brain Female	brain
13	chr11:16104400-16106800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:16104600-16106200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:16104600-16107000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:16104600-16107200	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr11:16104600-16107200	Weak transcription	Fetal Lung	lung
18	chr11:16104600-16107400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:16104600-16108000	Weak transcription	Left Ventricle	heart
20	chr11:16104600-16114400	Weak transcription	Liver	Liver
21	chr11:16104800-16112600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:16105000-16106600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr11:16105000-16107200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:16105000-16107800	Weak transcription	Brain Germinal Matrix	brain

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