Variant report

Variant	rs10766296
Chromosome Location	chr11:16166524-16166525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10766295	0.81[EUR][1000 genomes]
rs10766298	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10766300	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10766301	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832551	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832552	0.89[EUR][1000 genomes]
rs10832554	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832555	0.93[ASN][1000 genomes]
rs10832556	0.85[ASN][1000 genomes]
rs10832557	0.82[ASN][1000 genomes]
rs11023860	0.93[ASN][1000 genomes]
rs1349984	0.93[ASN][1000 genomes]
rs1349985	0.93[ASN][1000 genomes]
rs1349986	0.93[ASN][1000 genomes]
rs1356647	0.86[ASN][1000 genomes]
rs1378305	0.95[ASN][1000 genomes]
rs1455104	0.93[ASN][1000 genomes]
rs1455106	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1455109	0.91[ASN][1000 genomes]
rs1455111	0.93[ASN][1000 genomes]
rs1455115	0.88[ASN][1000 genomes]
rs1455117	0.86[ASN][1000 genomes]
rs1914875	0.85[ASN][1000 genomes]
rs1949482	0.88[ASN][1000 genomes]
rs1949483	0.88[ASN][1000 genomes]
rs2054095	0.86[ASN][1000 genomes]
rs2124202	0.95[ASN][1000 genomes]
rs3903292	0.90[ASN][1000 genomes]
rs6486276	0.93[ASN][1000 genomes]
rs6486277	0.86[ASN][1000 genomes]
rs6486278	0.86[ASN][1000 genomes]
rs6486279	0.86[ASN][1000 genomes]
rs7102224	0.88[ASN][1000 genomes]
rs7108091	0.93[ASN][1000 genomes]
rs7112473	0.87[ASN][1000 genomes]
rs7114017	0.88[ASN][1000 genomes]
rs7118395	0.93[ASN][1000 genomes]
rs7131157	0.85[ASN][1000 genomes]
rs7926424	0.93[ASN][1000 genomes]
rs7931734	0.88[ASN][1000 genomes]
rs7950736	0.88[ASN][1000 genomes]
rs978294	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16158400-16169200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:16163400-16170000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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