Variant report

Variant	rs10766301
Chromosome Location	chr11:16217413-16217414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16213165..16216422-chr11:16216965..16220387,3	K562	blood:
2	chr11:16215831..16218271-chr11:16626703..16629554,2	K562	blood:

Variant related genes	Relation type
ENSG00000110693	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10741689	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766294	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs10766295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10766296	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10766298	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10766300	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10832551	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10832552	0.89[EUR][1000 genomes]
rs10832553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10832554	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10832555	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs10832556	0.97[ASN][1000 genomes]
rs10832557	0.94[ASN][1000 genomes]
rs11023821	0.91[CEU][hapmap]
rs11023826	0.96[CEU][hapmap]
rs11023833	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11023860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11023879	1.00[YRI][hapmap]
rs1349984	0.94[ASN][1000 genomes]
rs1349985	0.94[ASN][1000 genomes]
rs1349986	0.94[ASN][1000 genomes]
rs1356647	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1378305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1455104	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1455106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1455109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1455111	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1455115	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1455117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1914875	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1949482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1949483	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2054095	0.98[ASN][1000 genomes]
rs2124202	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3903292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4335501	0.96[CEU][hapmap]
rs4335502	0.96[CEU][hapmap]
rs4342995	0.91[CEU][hapmap]
rs4437995	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs4757380	0.96[CEU][hapmap];1.00[YRI][hapmap]
rs6486276	0.94[ASN][1000 genomes]
rs6486277	0.98[ASN][1000 genomes]
rs6486278	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs6486279	0.98[ASN][1000 genomes]
rs7102224	1.00[ASN][1000 genomes]
rs7108091	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7112473	0.99[ASN][1000 genomes]
rs7114017	1.00[ASN][1000 genomes]
rs7118395	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7131157	0.97[ASN][1000 genomes]
rs7926424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7931734	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7947265	0.92[CEU][hapmap]
rs7950736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9645647	0.96[CEU][hapmap]
rs9645648	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap]
rs978294	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv897012	chr11:16189326-16283644	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv553563	chr11:16206658-16259405	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv897013	chr11:16206658-16307700	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv897014	chr11:16211343-16283644	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16207200-16221200	Weak transcription	Fetal Intestine Large	intestine
2	chr11:16212000-16217800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:16213400-16218400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:16213800-16217600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:16214800-16217600	Enhancers	Fetal Muscle Leg	muscle
6	chr11:16214800-16218200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:16215000-16217600	Enhancers	Fetal Heart	heart
8	chr11:16215200-16217800	Enhancers	HepG2	liver
9	chr11:16215400-16217600	Enhancers	Fetal Lung	lung
10	chr11:16215400-16217600	Enhancers	Right Ventricle	heart
11	chr11:16215400-16217600	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr11:16215400-16217800	Enhancers	NH-A	brain
13	chr11:16215400-16218000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr11:16215800-16218000	Enhancers	Osteobl	bone
15	chr11:16216000-16218000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:16216000-16218000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr11:16216200-16217800	Enhancers	Fetal Brain Female	brain
18	chr11:16216400-16217600	Enhancers	Fetal Brain Male	brain
19	chr11:16216400-16217600	Enhancers	A549	lung
20	chr11:16216600-16220000	Weak transcription	K562	blood
21	chr11:16216800-16217800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:16217000-16217600	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:16217000-16217600	Enhancers	Liver	Liver
24	chr11:16217200-16217600	Enhancers	Fetal Stomach	stomach
25	chr11:16217200-16217600	Enhancers	Pancreas	Pancrea
26	chr11:16217200-16217600	Enhancers	Psoas Muscle	Psoas
27	chr11:16217400-16217600	Enhancers	Left Ventricle	heart
28	chr11:16217400-16217600	Enhancers	Right Atrium	heart
29	chr11:16217400-16217600	Enhancers	NHLF	lung
30	chr11:16217400-16217800	Enhancers	Small Intestine	intestine
31	chr11:16217400-16218400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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