Variant report

Variant	rs7947265
Chromosome Location	chr11:16020894-16020895
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:16020621..16022625-chr11:16024207..16026994,2	K562	blood:
2	chr11:16017320..16020283-chr11:16020429..16023052,2	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10734238	0.81[EUR][1000 genomes]
rs10741687	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10741688	0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[ASN][1000 genomes]
rs10741689	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10766291	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10766292	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10766293	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs10766294	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs10766295	0.92[CEU][hapmap]
rs10766298	0.92[CEU][hapmap]
rs10766300	0.93[CEU][hapmap]
rs10766301	0.92[CEU][hapmap]
rs10832538	0.83[EUR][1000 genomes]
rs10832539	0.82[EUR][1000 genomes]
rs10832540	0.82[EUR][1000 genomes]
rs10832541	0.81[CEU][hapmap];0.82[EUR][1000 genomes]
rs10832542	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs10832543	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs10832544	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832545	0.92[EUR][1000 genomes]
rs10832551	0.85[CEU][hapmap]
rs10832553	0.93[CEU][hapmap]
rs10832554	0.92[CEU][hapmap]
rs11023806	0.81[EUR][1000 genomes]
rs11023807	0.81[EUR][1000 genomes]
rs11023808	0.81[EUR][1000 genomes]
rs11023809	0.81[EUR][1000 genomes]
rs11023810	0.82[EUR][1000 genomes]
rs11023815	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs11023819	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11023820	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs11023821	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023823	0.92[EUR][1000 genomes]
rs11023826	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs11023833	0.93[CEU][hapmap];0.80[EUR][1000 genomes]
rs11602209	0.92[EUR][1000 genomes]
rs12276728	0.82[CEU][hapmap]
rs12278364	0.92[EUR][1000 genomes]
rs12418884	0.80[EUR][1000 genomes]
rs1455106	0.92[CEU][hapmap]
rs16932414	0.83[AFR][1000 genomes]
rs16932450	0.81[AFR][1000 genomes]
rs16932453	0.81[AFR][1000 genomes]
rs34569224	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35038372	0.81[EUR][1000 genomes]
rs35189093	0.82[EUR][1000 genomes]
rs35572903	0.81[EUR][1000 genomes]
rs36029390	0.81[EUR][1000 genomes]
rs3922559	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4335501	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4335502	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4342995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4437995	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs4545520	0.85[JPT][hapmap]
rs4627036	0.81[EUR][1000 genomes]
rs4756842	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs4757378	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4757379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757380	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs7111279	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7938500	0.81[AFR][1000 genomes]
rs7942880	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9645647	0.96[CEU][hapmap];0.85[CHB][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9645648	0.92[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15999400-16022800	Weak transcription	K562	blood
2	chr11:16004800-16024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:16007800-16023000	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:16008000-16022800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:16010800-16021600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:16010800-16022800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:16010800-16022800	Weak transcription	Fetal Intestine Large	intestine
8	chr11:16011000-16033800	Weak transcription	Left Ventricle	heart
9	chr11:16011200-16021400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:16011400-16023000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr11:16015600-16023600	Weak transcription	Fetal Muscle Leg	muscle
12	chr11:16016000-16021600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr11:16020400-16023200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:16020600-16023000	Enhancers	Fetal Lung	lung
15	chr11:16020600-16023400	Enhancers	Osteobl	bone
16	chr11:16020800-16021200	Weak transcription	NHEK	skin
17	chr11:16020800-16022200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:16020800-16023200	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links