Variant report

Variant	rs11023809
Chromosome Location	chr11:16001354-16001355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:15993560..15998365-chr11:15999415..16005158,8	K562	blood:
2	chr11:15989562..15991887-chr11:15999668..16002450,2	K562	blood:
3	chr11:15989012..15991050-chr11:16001253..16003171,2	K562	blood:
4	chr11:16000707..16002922-chr11:16003968..16006105,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10734238	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10741687	0.88[EUR][1000 genomes]
rs10741689	0.88[EUR][1000 genomes]
rs10766292	0.82[EUR][1000 genomes]
rs10766293	0.88[EUR][1000 genomes]
rs10766294	0.87[EUR][1000 genomes]
rs10832538	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832539	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832540	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832541	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10832542	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10832543	0.88[EUR][1000 genomes]
rs10832544	0.82[EUR][1000 genomes]
rs10832545	0.88[EUR][1000 genomes]
rs11023806	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023807	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023808	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11023810	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11023815	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11023819	0.88[EUR][1000 genomes]
rs11023820	0.88[EUR][1000 genomes]
rs11023821	0.81[EUR][1000 genomes]
rs11023823	0.88[EUR][1000 genomes]
rs11023826	0.87[EUR][1000 genomes]
rs11602209	0.87[EUR][1000 genomes]
rs12276728	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12278364	0.88[EUR][1000 genomes]
rs12418884	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12420343	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35038372	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35189093	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35572903	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36029390	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3922559	0.81[EUR][1000 genomes]
rs4335501	0.87[EUR][1000 genomes]
rs4335502	0.88[EUR][1000 genomes]
rs4342995	0.81[EUR][1000 genomes]
rs4437995	0.88[EUR][1000 genomes]
rs4539287	0.87[EUR][1000 genomes]
rs4627036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756841	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4756842	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4757378	0.83[EUR][1000 genomes]
rs4757379	0.82[EUR][1000 genomes]
rs4757380	0.81[EUR][1000 genomes]
rs7111279	0.82[EUR][1000 genomes]
rs7947265	0.81[EUR][1000 genomes]
rs9645648	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832074	chr11:15927105-16100772	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv3330295	chr11:15999551-16001624	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:15990400-16011600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:15991600-16006600	Weak transcription	Liver	Liver
3	chr11:15991800-16006800	Weak transcription	Fetal Muscle Leg	muscle
4	chr11:15992400-16006600	Weak transcription	Duodenum Mucosa	Duodenum
5	chr11:15992600-16002400	Weak transcription	Stomach Mucosa	stomach
6	chr11:15992600-16006800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:15993000-16006800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr11:15993000-16010600	Weak transcription	Pancreas	Pancrea
9	chr11:15993000-16012800	Weak transcription	Right Ventricle	heart
10	chr11:15993200-16009600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:15993200-16010400	Weak transcription	Left Ventricle	heart
12	chr11:15993600-16006600	Weak transcription	Fetal Intestine Small	intestine
13	chr11:15995000-16002600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr11:15995400-16006800	Weak transcription	Fetal Intestine Large	intestine
15	chr11:15997800-16006600	Weak transcription	Fetal Lung	lung
16	chr11:15998200-16011600	Weak transcription	Aorta	Aorta
17	chr11:15999000-16001600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:15999200-16006600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:15999200-16009800	Weak transcription	Psoas Muscle	Psoas
20	chr11:15999400-16006400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr11:15999400-16022800	Weak transcription	K562	blood
22	chr11:15999600-16007400	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr11:15999600-16009800	Weak transcription	Fetal Heart	heart

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